BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0003.p
         (170 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313946|ref|YP_003778038.1| rod shape-determining MreD tran...   249   8e-68

>gi|300313946|ref|YP_003778038.1| rod shape-determining MreD
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 169

 Score =  249 bits (636), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 137/170 (80%), Positives = 156/170 (91%), Gaps = 1/170 (0%)

Query: 1   MNDPHYILLPANPLFIALSLVAAFLLNLLPWGQWVGVPDFVALVLVFWAIHEPRKIGISI 60
           MN+ HYILLPANPLFIA SLV AFLLNL+PWGQ  GVPDFVAL LVFW IH+PRK+GIS+
Sbjct: 1   MNN-HYILLPANPLFIAFSLVVAFLLNLMPWGQMAGVPDFVALALVFWNIHQPRKVGISV 59

Query: 61  AFMMGLLMDVNEATLLGENALAYTLLSYFSIMIHRRVLWFPVGTQALHILPLLLLTQAVQ 120
           AF+MGLLMDVNEATLLGENALAYTLLSYF+IMIHRRVLWFP+ TQALH+LPLLLL QAVQ
Sbjct: 60  AFLMGLLMDVNEATLLGENALAYTLLSYFAIMIHRRVLWFPLRTQALHVLPLLLLAQAVQ 119

Query: 121 LLVRLIVSGKFPHWYYFSESFVCALLWPVVAWLLLAPQRRAINRDDNRPI 170
           L+++L+V+GK P W+YFSES V ALLWPVV+ LLLAPQRRA++RD+NRPI
Sbjct: 120 LVIQLLVTGKSPDWFYFSESVVSALLWPVVSLLLLAPQRRAVDRDENRPI 169


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.145    0.479 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 403,863
Number of extensions: 12482
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,245,805
Effective search space: 113368255
Effective search space used: 113368255
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 127 (53.5 bits)