BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0001.p
         (137 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312672|ref|YP_003776764.1| TetR family transcription regul...   153   4e-39

>gi|300312672|ref|YP_003776764.1| TetR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 185

 Score =  153 bits (387), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 76/130 (58%), Positives = 94/130 (72%)

Query: 1   MANAVLSHIDGWFQREVYVPLRESADAMAGINRMFDEVKRYFLSGRKVCLVGVFALVNVR 60
           MA AVL H+D WF+R V+  L E  DA AGI  MFD+V RYFLSG++VCLVGVFAL N R
Sbjct: 54  MAQAVLGHVDAWFRRHVFESLAEHEDAEAGIKAMFDDVSRYFLSGQRVCLVGVFALGNER 113

Query: 61  DRFADKVKSYFVDWAAALHAALQRSGYEPEEAAGLTEEILAGIQGALVLARAVDDPQIFV 120
           DRFA  V+ YF  W  AL +AL R+G +P+EA  L EE++ GIQGALVLARA+D   +F 
Sbjct: 114 DRFAVMVRDYFTAWIDALASALVRTGRKPKEARMLAEEVVGGIQGALVLARALDQTDVFA 173

Query: 121 RTLERLQQRL 130
             ++R Q+RL
Sbjct: 174 DAMKRFQKRL 183


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 435,603
Number of extensions: 17175
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,260,010
Effective search space: 76860610
Effective search space used: 76860610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)