BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0134.p
         (127 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313779|ref|YP_003777871.1| short-chain dehydrogenase [Herb...   144   2e-36
gi|300310374|ref|YP_003774466.1| dehydrogenase oxidoreductase [H...    85   2e-18
gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein...    55   2e-09

>gi|300313779|ref|YP_003777871.1| short-chain dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 263

 Score =  144 bits (364), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 74/83 (89%)

Query: 45  GLARDLGVHGIRVNCIIPGAVRTPRQMRLWHSPEEEAKILASQCLHTRVDPHDVAALALF 104
           G+ARD G  G+RVN IIPGA+RTPRQ  LWH+PEEEAKILA+QCL TRVDPHDVAALALF
Sbjct: 181 GMARDFGRDGVRVNAIIPGAIRTPRQTLLWHTPEEEAKILAAQCLPTRVDPHDVAALALF 240

Query: 105 LASDSASKCSGRDYFVDAGWYGA 127
           L+SDS +KC+GR+Y+VDAGW GA
Sbjct: 241 LSSDSGAKCTGREYYVDAGWLGA 263


>gi|300310374|ref|YP_003774466.1| dehydrogenase oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 261

 Score = 85.1 bits (209), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 53/80 (66%)

Query: 45  GLARDLGVHGIRVNCIIPGAVRTPRQMRLWHSPEEEAKILASQCLHTRVDPHDVAALALF 104
           GLARDLG H IRVN + PG V T RQ++LW   E +  I  +QCL   + P  +A + LF
Sbjct: 181 GLARDLGPHKIRVNTVTPGWVMTERQIKLWLDEEGKKAIARNQCLQGDLLPWHLARMVLF 240

Query: 105 LASDSASKCSGRDYFVDAGW 124
           LA+D ++ C+ +++ VDAGW
Sbjct: 241 LAADDSAMCTAQEFIVDAGW 260


>gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein]
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 249

 Score = 54.7 bits (130), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 34  AGKRVVITGAXGLARDLGVHGIRVNCIIPGAVRTPRQMRLWHSPEEEAKILASQCLHTRV 93
           A K  V+  A  +AR+ G  GIRVNCI PG + T     +  S E++A+I  +  L    
Sbjct: 157 AAKAGVLGLARAMAREFGPQGIRVNCITPGLISTDINKDIL-SAEKKAEIAQTIPLGRLG 215

Query: 94  DPHDVAALALFLASDSASKCSGRDYFVDAGWY 125
            P DV  + +FLASD +  C+G    V+ G  
Sbjct: 216 GPDDVGGVCVFLASDLSQYCTGVTLDVNGGML 247


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 321,659
Number of extensions: 10350
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 3
Length of query: 127
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,264,745
Effective search space: 65766740
Effective search space used: 65766740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)