BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0123.p
         (400 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313774|ref|YP_003777866.1| galactose-1-epimerase [Herbaspi...   520   e-149

>gi|300313774|ref|YP_003777866.1| galactose-1-epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 354

 Score =  520 bits (1339), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 254/353 (71%), Positives = 279/353 (79%)

Query: 1   MTHFTLSSTAAGHGVTLYTLRNAHDMRVVISNRGATLISWWAPDRYGREADILLGYQDQQ 60
           MTHFTLS T A +GV LYTLRN   MRV ISN GA++I+WWAPDRYGREAD+LLG+ D Q
Sbjct: 1   MTHFTLSHTTAANGVQLYTLRNHTGMRVTISNLGASMINWWAPDRYGREADVLLGFADVQ 60

Query: 61  DYLANTPYFGGVIGRWGNRIAGGRFTLDGVDYQLDRNEGDNHLHGGAGGFHLLPWQVQAD 120
            Y  N  YFG ++GRWGNRIA GRF LDGV +Q+D NEG+NHLHGG  GFH   WQVQ D
Sbjct: 61  QYQHNPAYFGAIVGRWGNRIAAGRFNLDGVAHQVDCNEGENHLHGGVEGFHRQLWQVQPD 120

Query: 121 PEGLRMTLSSPHGAAGFPGNVLASVLYRLDDDGRLSIDYTATSDAPTPLNLTSHGYFNLN 180
           PEGLR+ L SP G AGFPG V+ASVLYRLDD+G+L IDYTATSDA TP+NLTSH YFNLN
Sbjct: 121 PEGLRLMLVSPAGQAGFPGTVMASVLYRLDDEGQLRIDYTATSDAATPINLTSHAYFNLN 180

Query: 181 GGVDDICDHILSIDADRYLQIDRALIPNKVVEVAGSAFDFRQPAPIGARLAWPDDQLGIA 240
           GG  DI DHI++IDAD YLQ+D  LIP    EVAGSAFDFRQPAPIG RL WPD QL +A
Sbjct: 181 GGASDIRDHIIAIDADAYLQVDAKLIPVGRAEVAGSAFDFRQPAPIGPRLDWPDPQLKLA 240

Query: 241 GGFDHCYCLRPGDPATASRSRNAQALREVAAVYDPGSGRELAVATTENGLQFYSGNFLEG 300
           GGFDHCYCLR          R AQALREVA VY+PGSGREL V+TTE GLQFYSGNFL G
Sbjct: 241 GGFDHCYCLRSEREPAPGEGRIAQALREVATVYEPGSGRELRVSTTEIGLQFYSGNFLSG 300

Query: 301 IAGRGAQAYAAHDGFCLEAQAYPDQVNGPDREDVILRPGQVYRQTTTYRVSVR 353
           + GRG Q YA HDGFCLEAQ+YPDQVN P  E VILRPGQVYRQTT YR+ VR
Sbjct: 301 VEGRGEQPYAIHDGFCLEAQSYPDQVNTPLCEAVILRPGQVYRQTTAYRLGVR 353


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,354,072
Number of extensions: 59964
Number of successful extensions: 162
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 313
Effective length of database: 1,207,925
Effective search space: 378080525
Effective search space used: 378080525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)