BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0122.p
         (191 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312948|ref|YP_003777040.1| bifunctional diaminohydroxyphos...   181   5e-47
gi|300311527|ref|YP_003775619.1| cytosine/adenosine deaminases p...    55   5e-09

>gi|300312948|ref|YP_003777040.1| bifunctional
           diaminohydroxyphosphoribosyl aminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 354

 Score =  181 bits (458), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 98/164 (59%), Positives = 115/164 (70%), Gaps = 8/164 (4%)

Query: 15  MALALQQAEQGMFTTTPNPRVGCVIVRDGRVIGAGFTQPPGGNHAEIQAMLDAQQRGNDV 74
           MALAL QA  GM  TTPNPRVGCVIV+D R+IGAGFTQPPGGNHAEIQAM DA  RG+DV
Sbjct: 1   MALALIQAGFGMLDTTPNPRVGCVIVKDQRIIGAGFTQPPGGNHAEIQAMADAAARGHDV 60

Query: 75  RGATVYVTLEPCSHFGRTPPCADALVKAGVGKVVAAMGDPX-----RNLNEVHIEAGSKL 129
           RGATVYVTLEPCSHFGRTPPCADAL++AGV +VVAA+ DP      + L  +   AG ++
Sbjct: 61  RGATVYVTLEPCSHFGRTPPCADALIRAGVARVVAAIADPNPMVAGQGLARLQ-AAGIEV 119

Query: 130 NASLLREGCVDELLVYLAPSLLGDGRSMFDLPALDDLSGKIALH 173
           +  LL E   D  + +L    +  GR    + +   L GK ALH
Sbjct: 120 SCGLLEEEARDINIGFL--HRMRTGRPWVRMKSAASLDGKTALH 161



 Score =  128 bits (322), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 57/76 (75%), Positives = 69/76 (90%)

Query: 116 RNLNEVHIEAGSKLNASLLREGCVDELLVYLAPSLLGDGRSMFDLPALDDLSGKIALHFH 175
           R +NE+H+EAG++LN +LLREGCVDELLVYLAPSL+GDGR+MF+LP L+DLSGKI + FH
Sbjct: 279 RQINELHVEAGARLNGALLREGCVDELLVYLAPSLIGDGRNMFELPPLEDLSGKIGIRFH 338

Query: 176 EVKQIGEDLRILARFS 191
           EVKQ+G DLRILARF 
Sbjct: 339 EVKQVGADLRILARFE 354


>gi|300311527|ref|YP_003775619.1| cytosine/adenosine deaminases
           protein [Herbaspirillum seropedicae SmR1]
          Length = 185

 Score = 54.7 bits (130), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 57/112 (50%), Gaps = 14/112 (12%)

Query: 9   ENDRQAMALALQQAEQGMFTTTPNPRVGCVIVRDGRVIGAGFTQPPGGN----HAEIQAM 64
           E D   M  AL+QA    +     P VG V+V+DG VI  GF QP G +    HAEI A+
Sbjct: 16  EADLLHMRAALEQARHA-WALGEVP-VGAVVVKDGVVIATGFNQPIGKHDPTAHAEIMAL 73

Query: 65  LDAQQRGNDVR--GATVYVTLEPCSHFGRTPPCADALVKAGVGKVVAAMGDP 114
             A +   + R  G  +YVTLEPC        C+ A++ A + +VV    DP
Sbjct: 74  RRAAEILGNYRLPGCELYVTLEPCVM------CSGAMMHARLARVVFGAADP 119


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 573,299
Number of extensions: 22747
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 3
Length of query: 191
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,241,070
Effective search space: 137758770
Effective search space used: 137758770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)