BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0118.p
         (356 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312944|ref|YP_003777036.1| Tfp pilus assembly transmembran...   109   4e-25
gi|300312943|ref|YP_003777035.1| hypothetical protein Hsero_3649...    57   3e-09

>gi|300312944|ref|YP_003777036.1| Tfp pilus assembly transmembrane
           PilW protein [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score =  109 bits (272), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/241 (35%), Positives = 123/241 (51%), Gaps = 24/241 (9%)

Query: 118 RSVRQANYVPWDNPAFLRNDLGGLDPGIEGLDNARVGE---HTVGMLSSSDNRAAHGSDL 174
           +++RQA ++PW++   LR     L  G+ G+D++R  E      G    S     H SDL
Sbjct: 65  QALRQAGHLPWED---LRQP-PALAAGLRGVDDSRQAELHDPATGQFGGSTGDGLHHSDL 120

Query: 175 LMIRFFGSGPRNQPDNDMLNCAGFAVPGPNGASTLSDLEEE-RGQSIFYVALDRTGEPEL 233
           LM+  FG+ P ++    + NC+G   P P G      LEE  R   I+Y+A   +GEPEL
Sbjct: 121 LMLGLFGAAPASR--AQVGNCSG--APAPTGP-----LEESARHWMIYYIAAGSSGEPEL 171

Query: 234 RCKYLTRDGGWSAAAIVRGIESFQVLYGVRDVQNTGGDLDYVNATRI-GTRWRDVAAVRI 292
           RC+Y  R G W++ AI RG+E+ Q+ Y + D  + G    + +A+ +   +W  V  V+I
Sbjct: 172 RCRYQGRHGVWTSDAIARGVEAMQLRYAI-DSDSDGAPDQWRDASDMSAAQWSQVVLVQI 230

Query: 293 ALLARGERNSRGGGTAVVHRLFGTAYQDGGDAGATIDETRLAPAVQQRIRKVFQTTIRLR 352
           ALL RGER  R        R    A       G T+D    AP  + R R VF+ T+ LR
Sbjct: 231 ALLVRGERQ-RPRDVVSPRRYELLAAPPPTPPGWTVDA---APG-EDRRRAVFRATVLLR 285

Query: 353 N 353
           N
Sbjct: 286 N 286


>gi|300312943|ref|YP_003777035.1| hypothetical protein Hsero_3649
          [Herbaspirillum seropedicae SmR1]
          Length = 170

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 7/86 (8%)

Query: 19 GFTLVEVLAAIAILALAASGVAAMQLHALRTAQHSAYQSTALQLAIELAELLRA------ 72
          GF+L+EVL A+ ++   A  +  +QLHALR++  SA  + A  +A+ELAEL  A      
Sbjct: 9  GFSLIEVLVAMLVVGTGALAMVMLQLHALRSSHDSALHARATLMALELAELRAALAPAPG 68

Query: 73 EAQPVLYQFDYNAATPS-VACTQTGC 97
           A P L+ FD   A  S +AC+ T C
Sbjct: 69 MADPTLFAFDGGRAPGSHIACSNTPC 94


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,083,473
Number of extensions: 45910
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 2
Length of query: 356
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 270
Effective length of database: 1,212,660
Effective search space: 327418200
Effective search space used: 327418200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)