BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0103.p
         (145 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC t...    65   2e-12
gi|300310287|ref|YP_003774379.1| branched-chain amino acid ABC t...    56   1e-09

>gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 655

 Score = 65.1 bits (157), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 1/107 (0%)

Query: 17  YYYIALGLLLLTLLANFIIERSFLGYYFRAIKDEPDAARSLGVSLSKYKQIAFAVSSFFT 76
           ++Y+   L++L++L    I +S LG  F+A++D P A+  +GVS+ +YK  AF +S+   
Sbjct: 156 FFYLVAVLMVLSMLVVHRILKSNLGRAFQALRDSPIASDCMGVSVYRYKVYAFIISAALA 215

Query: 77  AMGGSLYAQKELYIDPASVLGTGMSIKMALVAILGGIGTLFGPLVGA 123
            + G+LYA  E YI P +     ++I   L  I+GG  +  G L+GA
Sbjct: 216 GLSGALYAYSEEYISP-NTYNFELTIMFLLAVIMGGRKSRIGSLIGA 261


>gi|300310287|ref|YP_003774379.1| branched-chain amino acid ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score = 55.8 bits (133), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 2/110 (1%)

Query: 18  YYIALGLLLLTLLANFIIERSFLGYYFRAIKDEPDAARSLGVSLSKYKQIAFAVSSFFTA 77
           Y  AL ++ +  L  + + +S  G++F A++D   AAR +GV + + K +AFA+SSF   
Sbjct: 178 YLFALAIVTVLTLLCWRLVQSQTGHHFIAVRDNEQAARVIGVPVLRTKLLAFAISSFVIG 237

Query: 78  MGGSLYAQKEL-YIDPASVLGTGMSIKMALVAILGGIGTLFGPLVGAGLL 126
           + G L+    L  ++PA       S+++  + I+GG+ T+ G   GA L+
Sbjct: 238 VAGVLWGFVYLRTVEPAG-FNLDRSLQILFIVIIGGLATIRGAFFGAALI 286


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.141    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 335,740
Number of extensions: 11060
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 13
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 13
Length of query: 145
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,255,275
Effective search space: 85358700
Effective search space used: 85358700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)