BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0102.p (78 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC t... 75 7e-16 gi|300310683|ref|YP_003774775.1| amino acid ABC transporter comp... 74 3e-15 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 72 7e-15 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 72 7e-15 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 70 3e-14 >gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 655 Score = 75.5 bits (184), Expect = 7e-16, Method: Composition-based stats. Identities = 34/75 (45%), Positives = 52/75 (69%) Query: 2 DEVMAGLNPTEVRETVDVVLKIRDQGISCLIVEHVLEGIMPIANQIVVLDYGKKIADGSP 61 DE AGL +++E V ++ KIR+ GI+ +++EH ++ +M I + + VLD+G+KIA+G P Sbjct: 565 DEPAAGLTAPDIKELVAIIRKIREAGITIILIEHHMDVVMSICDTVTVLDFGQKIAEGKP 624 Query: 62 HDVSNDPHVIAAYLG 76 V DP VI AYLG Sbjct: 625 AQVQADPKVIEAYLG 639 >gi|300310683|ref|YP_003774775.1| amino acid ABC transporter composite ATP-binding protein/permease [Herbaspirillum seropedicae SmR1] Length = 627 Score = 73.6 bits (179), Expect = 3e-15, Method: Composition-based stats. Identities = 32/76 (42%), Positives = 55/76 (72%) Query: 1 MDEVMAGLNPTEVRETVDVVLKIRDQGISCLIVEHVLEGIMPIANQIVVLDYGKKIADGS 60 +DE AGL E + +++ K+R +G++ L+VEH ++ +M + ++IVV+D+G+KIA+G Sbjct: 525 LDEPAAGLRLGEKQALAELLRKLRGEGMAILLVEHDMDFVMELVDRIVVMDFGQKIAEGL 584 Query: 61 PHDVSNDPHVIAAYLG 76 P D+ N+P V+ AYLG Sbjct: 585 PADIQNNPAVLEAYLG 600 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 72.4 bits (176), Expect = 7e-15, Method: Composition-based stats. Identities = 35/76 (46%), Positives = 53/76 (69%) Query: 1 MDEVMAGLNPTEVRETVDVVLKIRDQGISCLIVEHVLEGIMPIANQIVVLDYGKKIADGS 60 +DE AG+N TE ++++KI+ +G + L++EH ++ +M + N+I VLDYGK IA+G Sbjct: 177 LDEPAAGMNATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGV 236 Query: 61 PHDVSNDPHVIAAYLG 76 P DV +P VI AYLG Sbjct: 237 PADVQKNPAVIEAYLG 252 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 72.4 bits (176), Expect = 7e-15, Method: Composition-based stats. Identities = 35/76 (46%), Positives = 53/76 (69%) Query: 1 MDEVMAGLNPTEVRETVDVVLKIRDQGISCLIVEHVLEGIMPIANQIVVLDYGKKIADGS 60 +DE AG+N TE ++++KI+ +G + L++EH ++ +M + N+I VLDYGK IA+G Sbjct: 177 LDEPAAGMNATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGV 236 Query: 61 PHDVSNDPHVIAAYLG 76 P DV +P VI AYLG Sbjct: 237 PADVQKNPAVIEAYLG 252 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 70.1 bits (170), Expect = 3e-14, Method: Composition-based stats. Identities = 33/79 (41%), Positives = 55/79 (69%), Gaps = 1/79 (1%) Query: 1 MDEVMAGLNPTEVRETVDVVLKIR-DQGISCLIVEHVLEGIMPIANQIVVLDYGKKIADG 59 +DE AGLNP E +E ++ ++R + G++ L++EH + IM I+++I+V+++GK I G Sbjct: 180 LDEPAAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTG 239 Query: 60 SPHDVSNDPHVIAAYLGDE 78 +P V +D VI AYLG+E Sbjct: 240 TPEQVRSDERVIKAYLGEE 258 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.139 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 253,356 Number of extensions: 8559 Number of successful extensions: 107 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 106 Number of HSP's successfully gapped: 13 Length of query: 78 Length of database: 1,619,870 Length adjustment: 49 Effective length of query: 29 Effective length of database: 1,387,855 Effective search space: 40247795 Effective search space used: 40247795 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 123 (52.0 bits)