BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0101.p (235 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 221 6e-59 gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t... 221 6e-59 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 217 6e-58 gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 217 7e-58 gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPa... 202 2e-53 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 221 bits (562), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 112/236 (47%), Positives = 164/236 (69%), Gaps = 4/236 (1%) Query: 1 MLQVRNLRASYDGVLALSKVDIDVKPGSLVALVGGNGNGKSTTLRAIAGL---NKVDAGS 57 +L+V+ L +Y G+ A+ +D++V G LV L+G NG GK+TTL+AI G ++V+ G Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVE-GH 63 Query: 58 IVFDNTDIGKVPPFDRVGLGLSLVPEGRRLFGRLSVQRNLELGAYSRSDKHEIAESIEDM 117 I + + F+ V L++VPEGR +F R+S+Q NL +GAY+ DK +IA I+ Sbjct: 64 IEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKW 123 Query: 118 YATFPIIKERRHQLAGTMSGGEQQMLAIARGLMAKPRLLLLDEPSWGIAPKFVTKVLDTI 177 +A FP +KER Q+AGT+SGGEQQMLA+AR LM+ P+LLLLDEPS G++P V K+ + I Sbjct: 124 FAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVI 183 Query: 178 QQVNAKGVSILLVEQNLHKALAIAHYGYVIQTGRIVMEGTGSELLNNDDIKKAYLG 233 + V+A+G++ILLVEQN AL AH GYV+++G I M+G ++L++ +K AYLG Sbjct: 184 RNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 >gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 221 bits (562), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 112/236 (47%), Positives = 164/236 (69%), Gaps = 4/236 (1%) Query: 1 MLQVRNLRASYDGVLALSKVDIDVKPGSLVALVGGNGNGKSTTLRAIAGL---NKVDAGS 57 +L+V+ L +Y G+ A+ +D++V G LV L+G NG GK+TTL+AI G ++V+ G Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVE-GH 63 Query: 58 IVFDNTDIGKVPPFDRVGLGLSLVPEGRRLFGRLSVQRNLELGAYSRSDKHEIAESIEDM 117 I + + F+ V L++VPEGR +F R+S+Q NL +GAY+ DK +IA I+ Sbjct: 64 IEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKW 123 Query: 118 YATFPIIKERRHQLAGTMSGGEQQMLAIARGLMAKPRLLLLDEPSWGIAPKFVTKVLDTI 177 +A FP +KER Q+AGT+SGGEQQMLA+AR LM+ P+LLLLDEPS G++P V K+ + I Sbjct: 124 FAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVI 183 Query: 178 QQVNAKGVSILLVEQNLHKALAIAHYGYVIQTGRIVMEGTGSELLNNDDIKKAYLG 233 + V+A+G++ILLVEQN AL AH GYV+++G I M+G ++L++ +K AYLG Sbjct: 184 RNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 217 bits (553), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 107/233 (45%), Positives = 156/233 (66%), Gaps = 1/233 (0%) Query: 1 MLQVRNLRASYDGVLALSKVDIDVKPGSLVALVGGNGNGKSTTLRAIAGLNKVDAGSIVF 60 MLQ + Y + AL V ++V+ G +V L+G NG GK+T L + G + +G ++F Sbjct: 2 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 61 Query: 61 DNTDIGKVPPFDRVGLGLSLVPEGRRLFGRLSVQRNLELGAYSRSDKHEIAESIEDMYAT 120 + DI ++ + + GL++ PEGRR+F L+V NL++GA+ S++ I + IE ++ Sbjct: 62 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNE-AIEQGIEYVFGL 120 Query: 121 FPIIKERRHQLAGTMSGGEQQMLAIARGLMAKPRLLLLDEPSWGIAPKFVTKVLDTIQQV 180 FP +KER Q AGTMSGGEQQMLAI R LM+KPRLLLLDEP+ G+AP + ++ D I+ + Sbjct: 121 FPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTI 180 Query: 181 NAKGVSILLVEQNLHKALAIAHYGYVIQTGRIVMEGTGSELLNNDDIKKAYLG 233 GV++ LVEQN +KAL +A GYV++ G +VM TG+ LL N D++KAYLG Sbjct: 181 RESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 217 bits (552), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 109/234 (46%), Positives = 158/234 (67%) Query: 1 MLQVRNLRASYDGVLALSKVDIDVKPGSLVALVGGNGNGKSTTLRAIAGLNKVDAGSIVF 60 +LQV +L +Y + A+ + + + G + ALVG NG GKST+L AI+GL K G ++ Sbjct: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLL 69 Query: 61 DNTDIGKVPPFDRVGLGLSLVPEGRRLFGRLSVQRNLELGAYSRSDKHEIAESIEDMYAT 120 D+ ++ P V G+ V EGR L+V+ NL LGAY+R DK +A +E +Y+ Sbjct: 70 HGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKDKDGVARDLEWVYSL 129 Query: 121 FPIIKERRHQLAGTMSGGEQQMLAIARGLMAKPRLLLLDEPSWGIAPKFVTKVLDTIQQV 180 FP++K R LAG +SGGEQQMLAI R LMAKP++LLLDEPS G+AP + ++ +Q++ Sbjct: 130 FPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEI 189 Query: 181 NAKGVSILLVEQNLHKALAIAHYGYVIQTGRIVMEGTGSELLNNDDIKKAYLGG 234 N G+++LLVEQN+ +AL IA GYV++TG+IV+E +G+ LL N + +AYLGG Sbjct: 190 NKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 243 >gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 288 Score = 202 bits (514), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 111/240 (46%), Positives = 151/240 (62%), Gaps = 8/240 (3%) Query: 2 LQVRNLRASYDGV-LALSKVDIDVKPGSLVALVGGNGNGKSTTLRAIAGL-----NKVDA 55 L + N+ YD V L L V +DV G +VAL+G NG GKSTTL+AI+ L V Sbjct: 26 LAINNIEVIYDHVILVLKGVSLDVPEGKIVALLGANGAGKSTTLKAISNLLHAERGDVTK 85 Query: 56 GSIVFDNTDIGKVPPFDRVGLGLSLVPEGRRLFGRLSVQRNLELGAYSRS-DKHEIAESI 114 GSI F + ++ P D V G+ V EGR FG L+V+ NL GAY+R E+ + Sbjct: 86 GSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISNAEVKHEL 145 Query: 115 EDMYATFPIIKERRHQLAGTMSGGEQQMLAIARGLMAKPRLLLLDEPSWGIAPKFVTKVL 174 E +Y FP +K RR +G SGGEQQM AI R +MAKP ++LLDEPS G+AP+ V ++ Sbjct: 146 EKIYDYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEIF 205 Query: 175 DTIQQVNAK-GVSILLVEQNLHKALAIAHYGYVIQTGRIVMEGTGSELLNNDDIKKAYLG 233 + ++ +N+K VS LL EQN AL A +GY+++ GR+VMEG SEL +N+D+K+ YLG Sbjct: 206 EIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEFYLG 265 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.138 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 741,130 Number of extensions: 31910 Number of successful extensions: 477 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 328 Number of HSP's successfully gapped: 137 Length of query: 235 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 153 Effective length of database: 1,231,600 Effective search space: 188434800 Effective search space used: 188434800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)