BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0091.p
         (345 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310773|ref|YP_003774865.1| exoribonuclease BN transmembran...   393   e-111

>gi|300310773|ref|YP_003774865.1| exoribonuclease BN transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  393 bits (1010), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/281 (74%), Positives = 244/281 (86%), Gaps = 1/281 (0%)

Query: 65  RQTWQFINAAVNAWLDNFAPSMGAAIAYYTMFSIAPILIIAIAIAGMIFGQDAAQGEIVE 124
           +Q WQ   AA+NAW+D+FAPSMGAAIAYYT+FSIAP+L+IAIA+AGM+FG DAAQGEIV 
Sbjct: 9   QQAWQMTMAAINAWIDDFAPSMGAAIAYYTIFSIAPMLVIAIAVAGMLFGHDAAQGEIVN 68

Query: 125 QIRSIVGTDGAIAVQVLLKSVSTRSDGVIATVLSVXG-GHGATAVFAELQSALDRIWKMP 183
           QIR IVGT+GA A+Q LLKSVS   +G+IA  +SV     GATAVF+ELQSALDRIW++P
Sbjct: 69  QIRDIVGTEGAFAIQGLLKSVSQPREGMIAAGISVVTLVIGATAVFSELQSALDRIWRIP 128

Query: 184 TVARQSSIWTLVRTRLLSFGLILGLGFMLMVSLVVSAGLAALGKWWGGWFEGWTIVMHVA 243
            V R+S +W L RTRLLSFGLILGLGF+L++SLVVSA LAALG+WWGGWFEGW +V+ + 
Sbjct: 129 AVKRKSGVWQLARTRLLSFGLILGLGFLLIISLVVSAALAALGRWWGGWFEGWQLVLQLL 188

Query: 244 NFVISFAVFTVLFSAIYRFMPRVSLSWHDVRIGAMATTVMFMIGKYLIGLYLGRTGMSSG 303
           NFV+SF VF+ LFS IY+FMPRV+LSW DV IGA+ATTV+F+IGKYLIGLYLG TGM+SG
Sbjct: 189 NFVLSFVVFSTLFSMIYKFMPRVTLSWRDVWIGAVATTVLFIIGKYLIGLYLGSTGMTSG 248

Query: 304 FGAAGSFALLLAWIYYSAQIFLLGAEFTWIYANNFGSRQPR 344
           FGAAGSFALLL WIYYSAQIFLLGAEFTWIYANNFGSR  R
Sbjct: 249 FGAAGSFALLLLWIYYSAQIFLLGAEFTWIYANNFGSRALR 289


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 849,935
Number of extensions: 26496
Number of successful extensions: 139
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 259
Effective length of database: 1,212,660
Effective search space: 314078940
Effective search space used: 314078940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)