BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0089.p
         (461 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314078|ref|YP_003778170.1| uncharacterized protein involve...   209   4e-55
gi|300311615|ref|YP_003775707.1| outer membrane biogenesis prote...   166   3e-42

>gi|300314078|ref|YP_003778170.1| uncharacterized protein involved
           in outer membrane biogenesis protein [Herbaspirillum
           seropedicae SmR1]
          Length = 682

 Score =  209 bits (531), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 124/329 (37%), Positives = 189/329 (57%), Gaps = 12/329 (3%)

Query: 4   ILRIALWALAALLLLIAALLIAVATVDWNVARPWVSRKVVELTGRTFAIGGNLKVGY--- 60
           + +I LW  A+L+LLI A +I + + DWN A+PW++ +V    GR FAI G+L + +   
Sbjct: 4   LTKIILWLCASLILLITAAVIFILSFDWNRAKPWINERVSASIGREFAIDGDLSLHWQRA 63

Query: 61  -TLGLPTEPG-WQRYVPRLRITGDNVRFANPAWASTGPDLLTARRVSVALHPLPLLKHRV 118
            TL     PG W+R++P  R+  + +R  NP   S    + T  +V+  L+PLPLL H +
Sbjct: 64  QTLPGAAPPGFWERWLPWPRLQAEQLRIGNPPAFSQAGQMATIGQVTFTLNPLPLLVHDI 123

Query: 119 VLSELIMDTPMLALERDAQGRRSWRLHDPDR-PSPWRLEVLHSSFSNGDLVYVNRLLDLD 177
            L  L +  P ++L R+AQ   +W        PS W L +   +   G L   + +  + 
Sbjct: 124 ALPSLDIRDPSVSLLRNAQAVNNWTFKSSSAGPSAWNLRLGRITLRQGKLSLDDAVDKIK 183

Query: 178 LRAKVTSLDDLNAKGPAGGQRFGLQFTATGTYRKASVNGSGKAGGLLAFTAEHAAFPIQA 237
           L+A++ +LD      PA  + +GL +  +G++  A V+G GKAGG+L+       +P+QA
Sbjct: 184 LKAEIDTLD------PAVEKIYGLGWKLSGSFNGAPVSGQGKAGGVLSLQNVQQPYPLQA 237

Query: 238 QALIGKNKAGIDGIINDPRAPAGLDLQLTLGGNSMSDLYPVTGVLLPQTPAYETRGRLIG 297
           Q  +GK   G+ G +  P A A LDL+L++ G SM +LYP+TGVLLP+TP + T GRLIG
Sbjct: 238 QVRVGKTAIGVHGTLTRPAALAALDLRLSVSGASMGNLYPLTGVLLPETPPFATEGRLIG 297

Query: 298 TKNDGIWLWTYEKFTGRVGDSDLSGTAEY 326
             + G   W YE F G+VG SD++G+  Y
Sbjct: 298 KIDAGHSQWDYEDFRGKVGQSDINGSLRY 326


>gi|300311615|ref|YP_003775707.1| outer membrane biogenesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 654

 Score =  166 bits (421), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/308 (34%), Positives = 155/308 (50%), Gaps = 7/308 (2%)

Query: 30  DWNVARPWVSRKVVELTGRTFAIGGNLKVGYTLGLPTEPG--WQRYVPRLRITGDNVRFA 87
           DWN A+PW+ R++    GR   + GNL + ++L    +      R  P+LR+  + +   
Sbjct: 41  DWNSAKPWLGRQLSAALGRDIRVDGNLDLSWSLAQADDEAGALARLAPQLRLRAERLFIG 100

Query: 88  NPAWASTGPDLLTARRVSVALHPLPLLKHRVVLSELIMDTPMLALERDAQGRRSWRLHDP 147
           NP WA +   L+ A  + V   PLPLL     +++L ++   L +ER    R++WR    
Sbjct: 101 NPDWAHSSDHLVRAAALDVRFSPLPLLHWHWHVTDLRVEGLDLVMERADDQRKNWRFSSQ 160

Query: 148 DRPSPWRLEVLHSSFSNGDLVYVNRLLDLDLRAKVTSLDDLNAKGPAGGQRFGLQFTATG 207
            R S W  ++    F +  + YV   LDLDLR     L+   A          LQ   TG
Sbjct: 161 PR-SRWSFDIHRIVFGHALIRYVELPLDLDLRFDARPLN-ATATNQKDSAALVLQAAVTG 218

Query: 208 TYRKASVNGSGKAGGLLAFTAEHAAFPIQAQALIGKNKAGIDGIINDPRAPAGLDLQLTL 267
            Y +A VNG  K G L     E + FP+QA+  IG  +  + G + +P   +  DL++ L
Sbjct: 219 RYGQAEVNGQIKGGALPDLLNEGSVFPLQAEGDIGGVQTQLSGNLINPHQLSRADLRIGL 278

Query: 268 GGNSMSDLYPVTGVLLPQTPAYETRGRLIGTKND---GIWLWTYEKFTGRVGDSDLSGTA 324
            G+S+  LYP TGV LP T A+ T G L  T+ D     W W Y  F+G+VG+SD +G A
Sbjct: 279 AGDSLDRLYPATGVPLPATRAFHTEGALTITRLDPQTKAWDWRYSGFSGKVGESDFAGDA 338

Query: 325 EYLPRQPK 332
           +Y+   PK
Sbjct: 339 QYVRGPPK 346


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,411,102
Number of extensions: 61924
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 2
Length of query: 461
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 373
Effective length of database: 1,203,190
Effective search space: 448789870
Effective search space used: 448789870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)