BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0083.p
         (395 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311781|ref|YP_003775873.1| hypothetical protein Hsero_2466...   565   e-162

>gi|300311781|ref|YP_003775873.1| hypothetical protein Hsero_2466
           [Herbaspirillum seropedicae SmR1]
          Length = 370

 Score =  565 bits (1455), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 270/392 (68%), Positives = 307/392 (78%), Gaps = 26/392 (6%)

Query: 1   LKTFHCDNCNKQVFFENTVCNHCGWMLGYQPEHQIMSSFTPVDPSEVGTEAPVDASTVLS 60
           + TFHCDNC  QVFFENTVC  CGWMLGYQPE Q ++SF+                  L 
Sbjct: 1   MNTFHCDNCGAQVFFENTVCGSCGWMLGYQPELQSITSFS-----------------ALE 43

Query: 61  TDASTDASDKSDTPLRWRSVNPLNAGKLFRQCSNYAQEQVCNWMLDDQDAHALCASCRLT 120
           T A+   ++    P RWRSV P N G++F+QC NY +E +CNWMLD+Q+ H LCASCRLT
Sbjct: 44  TPAAESGAEPG--PGRWRSVRPENEGRVFKQCLNYWRENICNWMLDEQETHELCASCRLT 101

Query: 121 TVIPSLDDPGNRILWQRLEVAKRRLLHSLWTMRLQPPPKMDDAGNGLSFEFLQDMPH-EK 179
            VIP+LD+  NR+LW RLE AKRRLLH+LWT+RLQP PKM+D  +GL+FEFLQD PH E+
Sbjct: 102 RVIPTLDEGNNRVLWSRLETAKRRLLHTLWTLRLQPAPKMEDEQSGLAFEFLQDQPHGER 161

Query: 180 IMTGHADGVITINIAEADPAYREKMREQMAEPYRTLLGHFRHESGHYYFDRLIAGTARLE 239
           ++TGHADGVITINIAEADPAYRE+ REQMAEPYRTLLGHFRHESGHYYFDRL+AG+A LE
Sbjct: 162 VLTGHADGVITINIAEADPAYREQAREQMAEPYRTLLGHFRHESGHYYFDRLVAGSAWLE 221

Query: 240 AFRALFGDETADYGQSLQRHYDNGPAQGWEQNFVSVYASSHPWEDWAETWAHYLHMFDTL 299
            FR  FGDE  DYG +LQ+HY+NGP   WE+ FVS YASSHPWEDWAETWAHYLHMFDTL
Sbjct: 222 PFRQRFGDEREDYGAALQKHYENGPRADWEEQFVSAYASSHPWEDWAETWAHYLHMFDTL 281

Query: 300 ETAYACGVQLRPQHRGEQQLVIAASPVEEDSFDALAREWFALTYVLNSLNRSIGMPDSYP 359
           ETAYACGVQLRP+H GEQ+LVI A P    SFD LAREWFALTYVLNSLNRSIGMPDSYP
Sbjct: 282 ETAYACGVQLRPRHAGEQKLVIPAPPTAAGSFDELAREWFALTYVLNSLNRSIGMPDSYP 341

Query: 360 FMLSTPVLEKLRFVHAVVREAGIESAAALPEV 391
           F LSTPVL KLRFVH +V      S AA P++
Sbjct: 342 FTLSTPVLGKLRFVHELV------SGAAAPDL 367


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,294,068
Number of extensions: 52308
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 308
Effective length of database: 1,207,925
Effective search space: 372040900
Effective search space used: 372040900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)