BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0079.p (517 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312843|ref|YP_003776935.1| response regulator containing a... 355 6e-99 gi|300310865|ref|YP_003774957.1| response regulator containing a... 342 4e-95 gi|300313329|ref|YP_003777421.1| transmembrane protein [Herbaspi... 241 1e-64 gi|300313918|ref|YP_003778010.1| transmembrane protein [Herbaspi... 240 2e-64 gi|300313993|ref|YP_003778085.1| diguanylate cyclase/phosphodies... 169 6e-43 >gi|300312843|ref|YP_003776935.1| response regulator containing a CheY-like receiver and a GGDEF domains protein [Herbaspirillum seropedicae SmR1] Length = 525 Score = 355 bits (911), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 204/491 (41%), Positives = 300/491 (61%), Gaps = 1/491 (0%) Query: 13 AKTLVILACALLVVLAVVTDWRARKQQLQEAGTTSHNIALALARHADDTFRQADTTLVFL 72 A+ V+L CA + + AR QL+ + S N+A ALARHA D + D L+ + Sbjct: 20 ARLFVVLICAAIAGGHLWQSMTARGVQLENNRSYSGNVAKALARHAYDVLQATDGLLLDM 79 Query: 73 AERLLHDERKPASLRKLEAFLAQQTMELPQLHGLFVIDKDGKWLLNSRQYQAGNVNSRDR 132 ++R+ A L L L + + E+PQL GL+V D+ GK LL S N+ DR Sbjct: 80 SDRIDSVGIAHARLVDLMPMLRRLSSEMPQLDGLYVFDEHGKRLLTSSAPPLAPANNSDR 139 Query: 133 EYYLYHRQHEDLSPHISMPVQSRANGEWIVTISRRLNGADGSFDGVVMAAIRITYFSKFY 192 +Y+++HR H+D+ PH+ + SR+ G WI+ +SRRLN DGSF GV++A + I +F++ Y Sbjct: 140 DYFIWHRDHDDVGPHVGKALLSRSTGRWIIPMSRRLNHPDGSFAGVLLATLDINHFNQLY 199 Query: 193 ESFDIGDDGAVILASNQGTLLVRRPLMNDSIGKSLAEAAIFRDHAAINTSGTARIRSSQD 252 + +IG G++ L GTLL R P I + ++ +F + + G + S D Sbjct: 200 RTVEIGKGGSIALLLRDGTLLTRMPFDPGYINRDFSQGRLFLEGLPHSPFGYLEVVSPLD 259 Query: 253 GVTRINSYRHLDRYPLFVAAALSEQEVLASWRSDVLLHVSGLIVLLSLLGWLGGRLIRQI 312 R SY+ +D+YPL + L+ +E LA W+ ++ + +++LL+++G G RL+ QI Sbjct: 260 ARQRFLSYQAVDKYPLVLVVTLAREEALADWKQQTFVYGAAVLLLLAIIGVFGWRLVGQI 319 Query: 313 ELRVEAENKANHAREHVEFLNRALQNLATQDGLTGLGNRRCFDEEMARALRRCAREGKPL 372 ELR+ AE++A A ++ N L+ LA QDGLTGL NRR D + +R R G L Sbjct: 320 ELRLRAEDRALQAMGELQMANHRLEMLAHQDGLTGLANRRHLDTMLETEFKRAERSGAAL 379 Query: 373 ALIMMDVDFFKRYNDTYGHLAGDECLRKLSQAIRQGQKREGDLAARYGGEELVLLLPDCD 432 ALIM+DVDFFK+YND YGH AGDECLR+++ +++ Q+R GDLAARYGGEE+ +LLP D Sbjct: 380 ALIMIDVDFFKQYNDLYGHQAGDECLRRVAGVLKERQRRPGDLAARYGGEEMAMLLPGTD 439 Query: 433 GDNARAIAEETLERIRALQLPHQGNSTGIVTVSAGVAVLDAV-SEGDLAESLIGRADKAL 491 + A A+AE+ I+AL+LPH+GN G+VTVS GV L+ + S ++L+G AD AL Sbjct: 440 AEGACAVAEKLRAGIQALELPHRGNPVGVVTVSVGVCALELLPSAARSVQALLGAADAAL 499 Query: 492 YLAKSTGRNRV 502 Y AK GRN+V Sbjct: 500 YEAKHEGRNQV 510 >gi|300310865|ref|YP_003774957.1| response regulator containing a CheY-like receiver domain and a GGDEF domain transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 342 bits (877), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 182/473 (38%), Positives = 288/473 (60%), Gaps = 3/473 (0%) Query: 31 TDWRARKQQLQEAGTTSHNIALALARHADDTFRQADTTLVFLAERLLHDERKPASLRKLE 90 T WRAR+ L E+ T + N+ALAL +HA+ + ++AD L + E L H++R ++ + Sbjct: 44 TAWRAREVALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRSASARIRTH 103 Query: 91 AFLAQQTMELPQLHGLFVIDKDGKWLLNSRQYQAGNVNSRDREYYLYHRQHEDLSPHISM 150 F+ + LPQL L V+D+ G+ + +S+Q + +Y+ YH+ P I Sbjct: 104 DFMIRSVASLPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRRSDRPFIGQ 163 Query: 151 PVQSRANGEWIVTISRRLNGADGSFDGVVMAAIRITYFSKFYESFDIGDDGAVILASNQG 210 P++S G+ +T+SRR+N DGSF GV++A I + YF ++YE F+IG G ++ G Sbjct: 164 PMRSHVTGQRTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGVILFGLTGG 223 Query: 211 TLLVRRPLMNDSIGKSLAEAAIFRDHAAINTSGTARIRSSQDGVTRINSYRHLDRYPLFV 270 +L++RRPL+ D +S A + R H G+ +RS +DGV RI+ ++ + YP+F Sbjct: 224 SLILRRPLLADMTDRSPAMSEALRKHMEQARRGSFAMRSERDGVERISCFQQGEAYPIFT 283 Query: 271 AAALSEQEVLASWRSDVLLHVSGLIVLLSLLGWLGGRLIRQIELRVEAENKANHAREHVE 330 AL++ ++L W V + G+++LL+++ + G RL+ + R AE +A AR+ +E Sbjct: 284 VVALAKDDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVLVAGRERAEAQAIAARQELE 343 Query: 331 FLNRALQNLATQDGLTGLGNRRCFDEEMARALRRCAREGKPLALIMMDVDFFKRYNDTYG 390 L R L+ + +DGLT + NRR FD +A L R R G+ L+L+M+DVD FK++NDTYG Sbjct: 344 SLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESLSLMMIDVDHFKQFNDTYG 403 Query: 391 HLAGDECLRKLSQAIRQGQKREGDLAARYGGEELVLLLPDCDGDNARAIAEETLERIRAL 450 H AGD CLR+++ AI +R+GD+ ARYGGEE ++LP+C +A+ +A ++ +R L Sbjct: 404 HAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAHRVVQAVRGL 463 Query: 451 QLPHQGNSTGIVTVSAGVAVLDAVSEGDLAE--SLIGRADKALYLAKSTGRNR 501 ++ H+ + G+VT+S GVA L A + L E LI AD ALY AK GR+R Sbjct: 464 EIAHERSPMGVVTISVGVASL-ASGKSLLIEPRELIDSADGALYRAKEEGRDR 515 >gi|300313329|ref|YP_003777421.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 501 Score = 241 bits (614), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 160/498 (32%), Positives = 255/498 (51%), Gaps = 24/498 (4%) Query: 17 VILACALLVVLAVV--TDWRARKQQLQEAGTTSHNIALALARHADDTFRQADTTLVFLAE 74 +IL +++VL++ + + +Q A T ++N+ L + R + LA Sbjct: 10 LILGLIIMMVLSICGASLYEGYRQTRISAITEANNVTLIVQRAISRNMEILSLAMDTLAY 69 Query: 75 RLLHD-ERKPASLRKLEAFLAQQTMELPQLHGLFVIDKDGKWLLNSRQYQAGNV--NSRD 131 R H + AS + +L T + L ++D DG + SR+ + +V N + Sbjct: 70 RYQHPLDLTHASDEERYNYLFGSTAAAHHITALAILDADGYVRVTSRRSASPSVVVNYSE 129 Query: 132 REYYLYHRQHEDLSPHISMPVQSRANGEW-IVTISRRLNGADGSFDGVVMAAIRITYFSK 190 R Y+ HR D IS P+++ E +V +S+RL+ DGSFDGVV+ A+ ++YF Sbjct: 130 RTYFTVHRDSADAGLFISRPIKANLGNELPVVVLSKRLSRKDGSFDGVVLMALDMSYFRD 189 Query: 191 FYESFDIGDDGAVILASNQGTLLVRRPLMNDSIGKSLAEAAIFRDHAA--INTSGTARIR 248 + +G+DG + L S+ G +R P SIG+ + F+ A ++ G R Sbjct: 190 LFTGLTLGEDGIMSLYSDDGVTYMRVPYHPSSIGREITNNPNFQRLRAMLVDNDGNFFAR 249 Query: 249 SSQDGVTRINSYRHLDRYPLFVAAALSEQEVLASWRSDVLLHVSGLIVLLSLLGWLGGRL 308 + DGV R+ ++R + PL V SE+ + +W + + LI+ +L G L + Sbjct: 250 AHTDGVERLYTFRRIPDAPLIVLLGRSERFIFKTWYDTLYSVLLLLIIFTALAGVLLMLV 309 Query: 309 IRQIELRVEAENKANHAREHVEFLNRALQNLATQDGLTGLGNRRCFDEEMARALRRCARE 368 R++ RV AE + L++LA DGLTGL NRR DE + +R R Sbjct: 310 RRELLKRVAAEKQ--------------LEDLARTDGLTGLLNRRSLDEALLAVWQRSQRS 355 Query: 369 GKP-LALIMMDVDFFKRYNDTYGHLAGDECLRKLSQAIRQGQKREGDLAARYGGEELVLL 427 + + +DVD+FKRYNDTYGH GD L+ ++ +R+ +R+ DLA RYGGEE V+L Sbjct: 356 PTAGFSTLFIDVDYFKRYNDTYGHEMGDTVLQAVAAVLREHLQRQNDLAGRYGGEEFVVL 415 Query: 428 LPDCDGDNARAIAEETLERIRALQLPHQGNSTGIVTVSAGVAVLDAVSEGDLAESLIGRA 487 L D A +A++ E I +PH G+ G+++VS GVA ++ + E ++ A Sbjct: 416 LEQTDEHGALRMAQQLCEAIYNRGIPHSGSPLGVISVSIGVATMNRAPHQRM-EDVLNAA 474 Query: 488 DKALYLAKSTGRNRVCAS 505 D ALY+AK GRNRVC + Sbjct: 475 DHALYIAKREGRNRVCVA 492 >gi|300313918|ref|YP_003778010.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 240 bits (613), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 159/499 (31%), Positives = 254/499 (50%), Gaps = 31/499 (6%) Query: 16 LVILACALLVVLAVV--TDWRARKQQLQEAGTTSHNIALALARHADDTFRQADTTLVFLA 73 +VILA A+L+V+A+ T +++ +Q Q A + + N+ L R +L LA Sbjct: 30 VVILAIAVLMVMAISASTLYQSYQQTRQSAVSNASNVTLVSQRAISRNLEMLSLSLDTLA 89 Query: 74 ERLLHDERKPASLRKLE-----AFLAQQTMELPQLHGLFVIDKDGKWLLNSRQYQA-GNV 127 R H P S R+L A+L T + + + V+D DG+ ++SR + G Sbjct: 90 YRFQH----PLSARRLNDAQRYAYLFGSTTNVSHIAVMAVLDADGRVQVSSRLGRGNGAP 145 Query: 128 NSRDREYYLYHRQHEDLSPHISMPVQSRANGEW-IVTISRRLNGADGSFDGVVMAAIRIT 186 + DR Y++ HR + ++S P+Q+ E +V +S+RL+ DGSF GVV+ A+ + Sbjct: 146 HYADRAYFIAHRDSPTVGLYVSRPMQASLGNELQVVVLSKRLSNEDGSFAGVVVMALDLA 205 Query: 187 YFSKFYESFDIGDDGAVILASNQGTLLVRRPLMNDSIGKSLAEAAIFRDHAAI--NTSGT 244 YF + +E +GD+G + L S++G +R P IG+ +++ F+ A+ G+ Sbjct: 206 YFRELFEGLALGDEGIISLYSDEGIAYMRVPYRETIIGRDISQTGNFQRLRAMLSEEEGS 265 Query: 245 ARIRSSQDGVTRINSYRHLDRYPLFVAAALSEQEVLASWRSDVLLHVSGLIVLLSLLGWL 304 ++ DGV R+ ++R + PL V +E+ + +WR + L + L WL Sbjct: 266 FFAHATNDGVRRLYTFRRIPGSPLIVFVGYAEEAIFKTWRKTFYAVLVSLAIFGLLTAWL 325 Query: 305 GGRLIRQIELRVEAENKANHAREHVEFLNRALQNLATQDGLTGLGNRRCFDEEMARALRR 364 + +++ RV AE R L+ LA DGLT L NRR DE + R Sbjct: 326 LLHVRQELRRRVTAE--------------RQLEALARTDGLTDLLNRRALDEALQATWER 371 Query: 365 CARE-GKPLALIMMDVDFFKRYNDTYGHLAGDECLRKLSQAIRQGQKREGDLAARYGGEE 423 C R G +++ +DVD+FK YNDTYGH GD L++++ + R D A RYGGEE Sbjct: 372 CQRNLGASFSVLFIDVDYFKAYNDTYGHKLGDTVLKEVAATLTARLPRHTDCAGRYGGEE 431 Query: 424 LVLLLPDCDGDNARAIAEETLERIRALQLPHQGNSTGIVTVSAGVAVLDAVSEGDLAESL 483 V+LL D A+ +A+ + +R + H + +VT+S GVA L+ E + Sbjct: 432 FVVLLEQTDLQGAQMMAQRLCDAVRERHIAHTSSPLAVVTISVGVATLER-DHHRRVEDV 490 Query: 484 IGRADKALYLAKSTGRNRV 502 + AD ALY AK GR+RV Sbjct: 491 LNAADAALYRAKQAGRDRV 509 >gi|300313993|ref|YP_003778085.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 573 Score = 169 bits (427), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 117/182 (64%), Gaps = 1/182 (0%) Query: 328 HVEFLNRALQNLATQDGLTGLGNRRCFDEEMARALRRCAREGKPLALIMMDVDFFKRYND 387 +E NR L+ L+ DGLTG+ NRR FDE +A +RR R G+ LAL+M+DVD+FK+YND Sbjct: 390 ELERANRKLEALSATDGLTGVANRRRFDEALANEMRRAVRSGQSLALLMLDVDYFKKYND 449 Query: 388 TYGHLAGDECLRKLSQAIRQGQKREGDLAARYGGEELVLLLPDCDGDNARAIAEETLERI 447 YGHLAGDECLR +++ +++ +R DL ARYGGEE +++ +CD A AE + I Sbjct: 450 RYGHLAGDECLRIVARVLQKSSRRATDLVARYGGEEFSVIIAECDTTQALQQAENICQAI 509 Query: 448 RALQLPHQGNSTGIVTVSAGVAVLDAVSEGDLAESLIGRADKALYLAKSTGRNRVCASEA 507 L+LPH + G ++ S GVAVL E E ++ AD+ALY AK GRNRV Sbjct: 510 FELKLPHADSPFGYISASIGVAVL-LPDEHTAPEQMVRIADQALYHAKYQGRNRVVLGSD 568 Query: 508 ST 509 +T Sbjct: 569 AT 570 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,446,506 Number of extensions: 57301 Number of successful extensions: 281 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 208 Number of HSP's successfully gapped: 42 Length of query: 517 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 428 Effective length of database: 1,198,455 Effective search space: 512938740 Effective search space used: 512938740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)