BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0072.p
         (325 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312916|ref|YP_003777008.1| hypothetical protein Hsero_3622...   529   e-151

>gi|300312916|ref|YP_003777008.1| hypothetical protein Hsero_3622
           [Herbaspirillum seropedicae SmR1]
          Length = 337

 Score =  529 bits (1362), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 258/325 (79%), Positives = 286/325 (88%)

Query: 1   LLYEPAGFICAFRFDEGRATQLKWHEVLAGKVAAPAFSWLHVKTADVKVRHWMETSDDIP 60
           LLYEPAGFICAFRF+EGRA Q+ W++++  +   PAF+WLHVKTADVK++HWM+    IP
Sbjct: 13  LLYEPAGFICAFRFEEGRARQMNWNDLVDYRPVEPAFTWLHVKTADVKIQHWMQHHSGIP 72

Query: 61  EHIAEFLLSSDTHPCLHTTANGAYGTLADLKMEIGDTGTEKGALHFFLDGNRLLTLRTQP 120
           ++I EFLLSSDTHP LH T +G YGTL D+KMEIGDTGTEKGALHF+LD  RLLTLRTQP
Sbjct: 73  DYITEFLLSSDTHPGLHATPDGVYGTLTDMKMEIGDTGTEKGALHFYLDRTRLLTLRTQP 132

Query: 121 LCSTNMLRQKVLDGALFDNPMELFAELLRCLADGFDARVASLNDKVDDIEESVLSDRRPE 180
           L STNMLRQKVLDG  FDNPM+LFAELLRCLADGF+AR+  LNDKVDDIE SVLSDRR E
Sbjct: 133 LLSTNMLRQKVLDGGDFDNPMDLFAELLRCLADGFNARLDKLNDKVDDIEFSVLSDRRAE 192

Query: 181 DRSELSAIRRQLAELRRHITPERRLLNQLNRLRPGWVPTAALEELNHALDELNELHLTLE 240
           DRSELS IRRQLAELRR+I PERR+L Q +RLRP WVP AALE+L HALDELNELH T+E
Sbjct: 193 DRSELSGIRRQLAELRRYIAPERRILAQFHRLRPSWVPLAALEDLTHALDELNELHSTVE 252

Query: 241 ALYERAKLLQEEIASQMSEQMNRNLMALSILTALLMPATLVSGIFGMNVAGLPGLHDEAS 300
           A+YERAKLLQEEIASQMSEQMNRNLMALSILTALLMPATLVSGIFGMNVAGLPGLHDEAS
Sbjct: 253 AVYERAKLLQEEIASQMSEQMNRNLMALSILTALLMPATLVSGIFGMNVAGLPGLHDEAS 312

Query: 301 FTMVMWVMMGLGVATVGLLKWLKIW 325
           F +VM VM GLGVATV  LKW+KI+
Sbjct: 313 FWIVMGVMGGLGVATVAFLKWMKIF 337


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 999,735
Number of extensions: 39477
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 240
Effective length of database: 1,217,395
Effective search space: 292174800
Effective search space used: 292174800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)