BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0070.p
         (179 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309655|ref|YP_003773747.1| hypothetical protein Hsero_0313...   150   5e-38

>gi|300309655|ref|YP_003773747.1| hypothetical protein Hsero_0313
           [Herbaspirillum seropedicae SmR1]
          Length = 167

 Score =  150 bits (379), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 108/167 (64%), Gaps = 1/167 (0%)

Query: 11  MTISFYNASVPVFKQGLNSLKGILAKAEAHATAKNIDADAFLKARLFPDMLNLTRQVQIA 70
           M++S Y  S+P+   GL++L  +L KAE HA    +D +  L ARL+ DM  L+ QVQ A
Sbjct: 1   MSLSLYQVSIPMLIHGLDTLSTLLEKAEQHAAQHQLDPNELLTARLYEDMYALSGQVQRA 60

Query: 71  ADFAKGVPARLANVEVPPYEDNEASFADLQARLDKTLAFIEALKPEQFDGAAGREIVLRP 130
           +D AK   +RL+ V  P + D+EASF DLQAR++KT+ F+E++  +  DG   R + ++ 
Sbjct: 61  SDTAKATASRLSGVAAPAFADDEASFDDLQARINKTIVFLESIPADAIDGQEERAVTMKL 120

Query: 131 GTPKEKRFTAEAYLLHYGVQHFLFHVTTAYDIFRHNGVEVGKSDYIG 177
              +E+  TA+ YL  +G+ +F FHVTTAY I RH GV++GK D++ 
Sbjct: 121 -RGEERTMTAQHYLTAFGLPNFFFHVTTAYGILRHKGVKLGKMDFLA 166


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 543,283
Number of extensions: 20729
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 100
Effective length of database: 1,245,805
Effective search space: 124580500
Effective search space used: 124580500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)