BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0068.p
         (539 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312914|ref|YP_003777006.1| glutaminyl-tRNA synthetase [Her...  1016   0.0  
gi|300312381|ref|YP_003776473.1| glutamyl-tRNA synthetase [Herba...    74   3e-14

>gi|300312914|ref|YP_003777006.1| glutaminyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 583

 Score = 1016 bits (2627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/536 (88%), Positives = 508/536 (94%)

Query: 1   VTRFPPEPNGYLHIGHAKSICLNFGLARDYNGRCHLRFDDTNPEKEDQEYVDTIIDSVKW 60
           VTRFPPEPNGYLHIGHAKSICLNFGLA DY GRCH+RFDDTNPEKE+QEYVDTI+DSVKW
Sbjct: 46  VTRFPPEPNGYLHIGHAKSICLNFGLAADYAGRCHMRFDDTNPEKEEQEYVDTILDSVKW 105

Query: 61  LGFDWDHDGQPHLYYASNYFDVMYAGAQALIRKGLAYVDEQNAEQMRETRGTLTEPGTDS 120
           LGF W+H+G+ HLYYASNYFDVMYA AQALIRKGLAYVDEQNAEQMRE RGTLTEPG +S
Sbjct: 106 LGFSWEHEGKSHLYYASNYFDVMYACAQALIRKGLAYVDEQNAEQMRENRGTLTEPGKNS 165

Query: 121 PWRNRPADESLRLFEEMRDGKHADGTLILRAKIDMASPNMNLRDPAIYRIRHATHHNTGD 180
           PWR+RPA+ESLRLFEEMRDGKH DG++ILRAKIDMASPNMNLRDPAIYRIRHATHHNTGD
Sbjct: 166 PWRDRPAEESLRLFEEMRDGKHPDGSMILRAKIDMASPNMNLRDPAIYRIRHATHHNTGD 225

Query: 181 KWCVYPMYSYAHPIEDALESITHSICTLEFEDQRPFYDWVLERLAEEGFFKKPLPHQYEF 240
           KW VYPMY++AHPIEDALE+I+HSICTLEFEDQRPFYDW+LE+LAEEGFFKKPLPHQYEF
Sbjct: 226 KWRVYPMYTFAHPIEDALENISHSICTLEFEDQRPFYDWLLEQLAEEGFFKKPLPHQYEF 285

Query: 241 ARLNLTYIITSKRKLKQLVDEHIVSGWDDPRMPTIVGLRRRGYTPEAIRLMCDRTGASKN 300
           ARLNLTYIITSKRKL+QLVDE IVSGWDDPRMPTIVGLRRRGYTPEAIRLMCDRTGASKN
Sbjct: 286 ARLNLTYIITSKRKLRQLVDEKIVSGWDDPRMPTIVGLRRRGYTPEAIRLMCDRTGASKN 345

Query: 301 NSWIDYSILEGALRDDLDPKAPRAVAVLRPLKLIIDNFPEGQSVECSAPVYPPAHPLHDS 360
           NSWID+S+LEGALR+DLDPKAPRAVAVLRPLKLIIDNFPEG S++CSAPVYPPAHP HD+
Sbjct: 346 NSWIDFSVLEGALREDLDPKAPRAVAVLRPLKLIIDNFPEGVSIDCSAPVYPPAHPEHDT 405

Query: 361 EHRLFPITRNLWIEKEDFMEVPTKGYFRLFPGNKVRLRYGYVVECTGCDKDADGNVIAVH 420
            HR FPIT+ LWIE+EDFME PTKGYFRLFPGNKVRLRYGYVVECTGCDKD  GNVIAVH
Sbjct: 406 AHRHFPITKELWIEREDFMEEPTKGYFRLFPGNKVRLRYGYVVECTGCDKDEHGNVIAVH 465

Query: 421 CNYFEDSKSGTPGSANYKVKGNLHWVSADHALEAEVRLYDRLFTDAHPDAGGKDFKLALN 480
           CNYFEDSKSGT GS+NYKVKGNLHWVSA+HAL  EVRLYDRLF+D HPDAGGKDF  ALN
Sbjct: 466 CNYFEDSKSGTEGSSNYKVKGNLHWVSAEHALATEVRLYDRLFSDPHPDAGGKDFLAALN 525

Query: 481 PSSKEVITAYLEPTLKTAAAGAIYQFERHGYFVADRVDSVAGKPVFNRAVTLKDSW 536
           P+SKEVITAYLEPTLKTA  G IYQFERHGYFVADRVDS AG+P+FNRAVTLKDSW
Sbjct: 526 PNSKEVITAYLEPTLKTAQPGEIYQFERHGYFVADRVDSTAGQPIFNRAVTLKDSW 581


>gi|300312381|ref|YP_003776473.1| glutamyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 482

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 8/130 (6%)

Query: 2   TRFPPEPNGYLHIGHAKSICLNFGLARDYNGRCHLRFDDTNPEKEDQEYVDTIIDSVKWL 61
           TRF P P GYLH+G A++   ++  AR + G   LR +DT+ E+   E V  II+ ++WL
Sbjct: 24  TRFAPSPTGYLHLGGARTALFSWAYARRFGGTFVLRIEDTDVERSTPEAVQAIIEGMQWL 83

Query: 62  GFDWDHDGQPHLYYASNYFDVMYAGAQALIRKGLA---YVDEQNAEQMRE-TRGTLTEPG 117
           G   +HD  P  +Y     D        ++ +G A   Y   +  E MRE  R    +P 
Sbjct: 84  GL--EHDEGP--FYQMKRMDRYREVIAQMLEQGTAYYCYCTPEEVEAMRERQRAAGEKPR 139

Query: 118 TDSPWRNRPA 127
            D  WR  P 
Sbjct: 140 YDGTWRPEPG 149


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,873,554
Number of extensions: 81644
Number of successful extensions: 189
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 2
Length of query: 539
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 449
Effective length of database: 1,193,720
Effective search space: 535980280
Effective search space used: 535980280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)