BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0059.p
         (362 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312912|ref|YP_003777004.1| transmembrane sensor histidine ...   433   e-122

>gi|300312912|ref|YP_003777004.1| transmembrane sensor histidine
           kinase-like ATPase [Herbaspirillum seropedicae SmR1]
          Length = 380

 Score =  433 bits (1113), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/345 (60%), Positives = 268/345 (77%), Gaps = 7/345 (2%)

Query: 21  PTMIINLLCALVVTYLMRIGAGFVENLVFSICIGTTAMVLIDCGRLLLWGEDEPNKPGFL 80
           PT++INL+CAL VTYL+RIG GF ENL  S+CIG  AM+LI+  RLL+WG+DEPNK GF 
Sbjct: 25  PTLLINLMCALAVTYLLRIGDGFYENLQISMCIGLLAMLLINGARLLIWGDDEPNKLGFA 84

Query: 81  LMLVIFAPLSFVIGNMIAGALLGYPLRIFNTGQANNTIGVIVLILLACVGATLFYWNREK 140
           ++L + APL+ ++G ++A  LLG P+       ++N I V+VL  L C GAT+F+WNR+K
Sbjct: 85  VLLAVLAPLAVLLGRVLATLLLGQPVVSLVPEHSDNIIAVMVLTFLVCFGATVFFWNRQK 144

Query: 141 MAALEARNVVIEKQALQAQLQMLQAQIEPHMLFNTLATLQTLISSEPIRAQQMLDQLIHY 200
           MA L+A    +EK A+ AQLQ LQAQIEPHMLFNTLATLQ+LIS++P++A+ ML+QL+ Y
Sbjct: 145 MATLQAHASEVEKHAVLAQLQTLQAQIEPHMLFNTLATLQSLISTDPLQAELMLNQLVQY 204

Query: 201 LRATLSTSRSEQTTLGQEFDLIKAYLGLMSLRMGLRLTYSLQLPDELRRQRIAPMLLQPL 260
           LR TLS SR++  +L QEFDLIKAYLGLMSLRMGLRL+Y+LQLP  L R R+APMLLQPL
Sbjct: 205 LRTTLSASRADSCSLQQEFDLIKAYLGLMSLRMGLRLSYTLQLPSHLGRLRLAPMLLQPL 264

Query: 261 VENAIRHGLEPKIDGGDCTVSVTQHQELLIISVFDTGMGLNSTASYNRPDST-------H 313
           VENAI+HGLEPK+DGG+CTV    H ++L++SV DTG+GL ++ S N+P +        H
Sbjct: 265 VENAIKHGLEPKVDGGNCTVRAAVHNDMLVLSVLDTGVGLPTSVSLNQPPAQKEPVIGMH 324

Query: 314 LGLENIRARLSVLYGPEAELTLTHNIPEGTVAQITIPVYALKKSY 358
            GL+NIR RLS LYGP AEL +THN+P G +AQITIP+ +LK ++
Sbjct: 325 FGLDNIRERLSTLYGPLAELIITHNVPAGAMAQITIPLKSLKSAH 369


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 982,506
Number of extensions: 37747
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,212,660
Effective search space: 334694160
Effective search space used: 334694160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 131 (55.1 bits)