BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0058.p
         (253 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312910|ref|YP_003777002.1| glycerophosphoryl diester phosp...   303   1e-83
gi|300311918|ref|YP_003776010.1| glycerophosphoryl diester phosp...    71   1e-13

>gi|300312910|ref|YP_003777002.1| glycerophosphoryl diester
           phosphodiesterase [Herbaspirillum seropedicae SmR1]
          Length = 247

 Score =  303 bits (775), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 162/250 (64%), Positives = 189/250 (75%), Gaps = 8/250 (3%)

Query: 1   MWPYPKVAAHRGGGTLAPENTLAGFRCGMAHGFRAVEFDVMLTADEQAILMHDPVFGRTL 60
           MWPYPK+ AHRGGGTLAPENTLAGFR G+ +G+RAVEFDVMLT DE  ILMHDP  GRTL
Sbjct: 1   MWPYPKILAHRGGGTLAPENTLAGFRAGLQYGYRAVEFDVMLTRDEVPILMHDPERGRTL 60

Query: 61  PGEGKVAEHTLAQLQQLDAGGWHSPQYAGEPVCTLQQVLEFSRANGIWMNIEIKPAGDAW 120
           PG GK+AE   A L++LDAG W  P +AGE +CTL+Q L+F + +GIWMN+EIKPA  A 
Sbjct: 61  PGSGKIAETDWAVLRELDAGTWRDPVFAGERLCTLEQALDFCQEHGIWMNVEIKPATPAA 120

Query: 121 AVRTGEVAGEVTARFFAAEIAAHVPGRNDRTLPLFSSFSFDALMAAKRVAPGIPRGFLVD 180
           A RT E+  +  AR FA +  A         LP+ SSFSF+AL+A +  AP +PRGFLV+
Sbjct: 121 ARRTAELTAQAVARRFARDAGA--------ALPVLSSFSFEALLAVQETAPQLPRGFLVE 172

Query: 181 RIPADWETRLQALDAVALHTSHKNLTPALAQAVKQAGYGLFCYTVNDPARAEEILGWGVD 240
            IP DW+ RL  L AVALHT+HK+LTPALA AVK AGYGLFCYTVN+ ARA EI  WGVD
Sbjct: 173 VIPDDWQARLAQLQAVALHTNHKHLTPALAAAVKAAGYGLFCYTVNETARAAEITAWGVD 232

Query: 241 GFCTDRIDLI 250
            FCTDRIDLI
Sbjct: 233 AFCTDRIDLI 242


>gi|300311918|ref|YP_003776010.1| glycerophosphoryl diester
           phosphodiesterase [Herbaspirillum seropedicae SmR1]
          Length = 315

 Score = 70.9 bits (172), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 7   VAAHRGGGTLAPENTLAGFRCGMAHGFRAVEFDVMLTADEQAILMHDPVFGRTLPGEGKV 66
           V++HR   T   EN+L G R  +A G    E DV  T D   +LMHD    RT  G G V
Sbjct: 47  VSSHRSCWTETSENSLDGIRRCIAEGIDIGEIDVRTTQDGALVLMHDQTVDRTTNGRGAV 106

Query: 67  AEHTLAQLQQL---DAGGWHSPQYAGEPVCTLQQVLEFSRANGIWMNIEIKPA 116
            E TLAQ+Q L     GG          V TLQQ L  +R   I +N+++K A
Sbjct: 107 TELTLAQIQDLRLYTRGGRQGATLTSRRVPTLQQALAVARGR-IVLNLDVKDA 158


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 921,740
Number of extensions: 39881
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 2
Length of query: 253
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,226,865
Effective search space: 208567050
Effective search space used: 208567050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)