BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0055.p
         (874 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312908|ref|YP_003777000.1| alanyl-tRNA synthetase [Herbasp...  1584   0.0  

>gi|300312908|ref|YP_003777000.1| alanyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 874

 Score = 1584 bits (4102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 773/873 (88%), Positives = 817/873 (93%)

Query: 1   MNSAEIRDKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTDKRNYVRA 60
           MNSAEIRDKFLKFFESK HTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTDKRNYVRA
Sbjct: 1   MNSAEIRDKFLKFFESKEHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTDKRNYVRA 60

Query: 61  TSVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKHDSLVWAWELLTKVYGLP 120
            SVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFK +SL WAWELLT+VYGLP
Sbjct: 61  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTQVYGLP 120

Query: 121 AEKLWATVYETDDEAYDIWHKVIGLPKERIVRIGDNKGAPYASDNFWQMADTGPCGPCSE 180
           A+KLWATVY+TDDEAYDIW K IGLP ER+VRIGDNKGAPYASDNFWQMA+TGPCGPCSE
Sbjct: 121 ADKLWATVYQTDDEAYDIWTKDIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 180

Query: 181 IFYDHGPDVWGGPPGSPEQDGDRYIEIWNNVFMQFDRQIDPKTGEATLTPLPAPCVDTGM 240
           IFYDHGPDVWGGPPGSP+ DGDRYIEIWNNVFMQFDRQ+DP TGE TLTPLPAPCVDTGM
Sbjct: 181 IFYDHGPDVWGGPPGSPDADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 240

Query: 241 GLERLAAILQHVHSNYEIDLFQKLIKAAARETNVTDLENNSLKVIADHIRATSFLIVDGV 300
           GLERLAAILQHVHSNYEIDLFQ LIKAAARET  TDL N SL+VIADHIRATSFLIVDGV
Sbjct: 241 GLERLAAILQHVHSNYEIDLFQALIKAAARETGETDLSNASLRVIADHIRATSFLIVDGV 300

Query: 301 IPGNEGRGYVLRRIIRRALRHGHKLGQTQPFFYKLVKDLVAEMGAAYPELPAAAARVEQV 360
           IPGNEGRGYVLRRIIRRALRHGHKLGQT+PFF+KLVKDLV +MGAAYPELP AA RVE V
Sbjct: 301 IPGNEGRGYVLRRIIRRALRHGHKLGQTKPFFHKLVKDLVVQMGAAYPELPEAAERVEMV 360

Query: 361 LKQEEERFGETLEHGMKILEAALAKNAARLDGETAFTLYDTYGFPLDLTADICRERNVEL 420
           LKQEEERFGETLEHGMKILEAALA N  +LDGETAFTLYDTYGFPLDLTADICRERNVEL
Sbjct: 361 LKQEEERFGETLEHGMKILEAALAANTGKLDGETAFTLYDTYGFPLDLTADICRERNVEL 420

Query: 421 DEAGFATAMERQKSTARAAGKFKLAAGIEYSGGKTRFVGYDALTQQAKVTALYVDGSAVA 480
           DEAGF  AMERQKS ARAAGKFK+AA IEY+G KTRFVGY++L Q AKV ALYV GS V 
Sbjct: 421 DEAGFTAAMERQKSAARAAGKFKMAAAIEYTGDKTRFVGYESLAQSAKVVALYVAGSPVQ 480

Query: 481 KVEAGQDAIVVLDTTPFYAESGGQAGDAGALESSGALFAVADTQKIQPEVFGHHGSLIKG 540
           K+EAGQDAIVVLDTTPFYAESGGQ GDAGALE++  LFAVADTQKIQ EVFGHHG LIKG
Sbjct: 481 KIEAGQDAIVVLDTTPFYAESGGQCGDAGALEAANGLFAVADTQKIQAEVFGHHGQLIKG 540

Query: 541 SLSVGDAVEAKVDAEQRAQIMRNHSATHLMHKALREVLGDHVSQKGSLVDADKTRFDFSH 600
           SL+VGDAV+AKVDA+QRA+ MRNHSATHLMHKALREVLG HVSQKGSLVDADKTRFDFSH
Sbjct: 541 SLAVGDAVQAKVDADQRARTMRNHSATHLMHKALREVLGSHVSQKGSLVDADKTRFDFSH 600

Query: 601 NAPMSAEEIRRVEEIVNREILANAATEAKLMGYDDAVGAGAMALFGEKYGDEVRVLSIGS 660
           NAPM+AEEIRRVEEIVNRE+LAN AT A+LMGYDDA+ AGAMALFGEKYGD+VRVLSIG+
Sbjct: 601 NAPMTAEEIRRVEEIVNREVLANVATGAQLMGYDDAIAAGAMALFGEKYGDQVRVLSIGT 660

Query: 661 SRELCGGTHVSRTGDIGLFKIVAEGGVAAGIRRVEAVSGEGALALVQSLSNRIAEAAAAL 720
           S ELCGGTHV+RTGDIGLFKIV+EGGVAAGIRRVEAV+GEGALALVQSLS+R+AEAAAAL
Sbjct: 661 STELCGGTHVTRTGDIGLFKIVSEGGVAAGIRRVEAVTGEGALALVQSLSSRVAEAAAAL 720

Query: 721 KAQPEELTQRIAQVQDHVKALEKELSALKSKLASNQGDELLAQAVDVNGIKVLAATLEGA 780
           K QPEEL  RI QVQD VKALEKEL++LKSKLAS+QGDEL+ QAVD+NGIKVLAATLEGA
Sbjct: 721 KTQPEELLPRIGQVQDQVKALEKELASLKSKLASSQGDELVNQAVDINGIKVLAATLEGA 780

Query: 781 DVATLRETMDKLKDKLKTAAIVLASVKDGKVSLIAGVTADATSKVKAGELVNFVAQQVGG 840
           DVATLRETMDKLKDKLKTAAIVL SVKDGKVSLIAGVTADAT+KVKAGELVNFVAQQVGG
Sbjct: 781 DVATLRETMDKLKDKLKTAAIVLGSVKDGKVSLIAGVTADATAKVKAGELVNFVAQQVGG 840

Query: 841 KGGGRPDMAQAGGTDPSGLPKALQGVVAWVGAK 873
           KGGGRPDMAQAGGT+P+ LP ALQGV  WV +K
Sbjct: 841 KGGGRPDMAQAGGTEPAALPGALQGVAGWVQSK 873


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,680,306
Number of extensions: 115830
Number of successful extensions: 395
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 1
Length of query: 874
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 780
Effective length of database: 1,174,780
Effective search space: 916328400
Effective search space used: 916328400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 135 (56.6 bits)