BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0049.p
         (82 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H...    57   3e-10
gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H...    53   4e-09

>gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase
          [Herbaspirillum seropedicae SmR1]
          Length = 372

 Score = 57.0 bits (136), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/44 (61%), Positives = 37/44 (84%), Gaps = 1/44 (2%)

Query: 1  MASLSIRNVRKVYPNGNEVLKGIDLEIEDGQFLILVGGSGCGKS 44
          MA++SIRN+ K Y + NEV++ I+LEIEDG+F++ VG SGCGKS
Sbjct: 1  MAAVSIRNLAKRY-DDNEVMRDINLEIEDGEFVVFVGPSGCGKS 43


>gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase
          [Herbaspirillum seropedicae SmR1]
          Length = 377

 Score = 53.1 bits (126), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 33/44 (75%)

Query: 1  MASLSIRNVRKVYPNGNEVLKGIDLEIEDGQFLILVGGSGCGKS 44
          MA ++I+ +RK Y    +VL G++L+I DG+F +LVG SGCGKS
Sbjct: 1  MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKS 44


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.125    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 196,593
Number of extensions: 5954
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 3
Length of query: 82
Length of database: 1,619,870
Length adjustment: 53
Effective length of query: 29
Effective length of database: 1,368,915
Effective search space: 39698535
Effective search space used: 39698535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 123 (52.0 bits)