BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0046.p
         (402 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313831|ref|YP_003777923.1| sugar ABC transporter periplasm...   208   8e-55

>gi|300313831|ref|YP_003777923.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 446

 Score =  208 bits (529), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 124/392 (31%), Positives = 193/392 (49%), Gaps = 24/392 (6%)

Query: 28  VEVLHYWTSGGEAKSVAELKKIMEAKGVTWKDFAVAGGAGENATTALKARVIAGSPPTAA 87
           ++VLH+WTS  E +++  +   +  + + W+D A+ GGAG  A   LK+ V+A   P   
Sbjct: 54  LQVLHWWTSASERQAINVVVNQLAKQDIQWRDVAIPGGAGMGAAKVLKSMVLANRAPEVT 113

Query: 88  QIKGPAIQEWGQEGVLANIDSAATAGKWDSLLPKSVSSVMKYQGHYVAAPVNVHRVNWLW 147
           Q+ G    EW   G+L  +D+ A  G W+  +  +V S++   GH VAAP+ +HR+N L+
Sbjct: 114 QLNGVVFGEWADLGLLLELDNVAVQGNWEKQMFPTVWSLLNNHGHVVAAPLGIHRINSLY 173

Query: 148 INPEVLKKAGAKTPTNWDEFFDAAEKIKKAGFVAVAHGGXG---------------GADF 192
            N  V K+     P  WDEF    +K++ +G V +A                    G  +
Sbjct: 174 YNVAVFKRYNLSPPKTWDEFDQIVKKLQGSGVVPLAQSAEAWQLATLFENLALAESGPAY 233

Query: 193 YQKALVKLDQTALTSANMVKTFDTLGKIKTYIDKDSAGRDWNLATAMVINGKAGMQFMGD 252
           Y+K  V++   A   A M+     L  +   + +    R W      +++G+A M  MGD
Sbjct: 234 YRKLFVEMSPAAYLDARMLHILKRLRALAGAMAQPVRERPWTEVARSMVSGEAAMLIMGD 293

Query: 253 WAKGEFTTAGKQPGKDYLCVAAPGTDKSYTFNIDSIAMFKVKNPDSQKAQLTLATAIMSP 312
           WAKGE    G +  + + C  APGT + + ++ D++AMF   N   Q  Q TLA   MSP
Sbjct: 294 WAKGELNAWGMEVDQQFGCAPAPGTGEYHLYSTDTLAMF-AGNYAHQPMQETLARLTMSP 352

Query: 313 EFQEVFNLNKGSIPV-RPDIPRGKFDSCATKSMDDFATSSKANTLE-PSMAHGMAVSSAA 370
             Q  +N  KGSIPV R   P    D CA    D + T SK    + PS+ H MA     
Sbjct: 353 AVQSEYNRIKGSIPVLRAADP--HMDRCAR---DSWRTFSKGPMWQAPSLVHRMATDDTT 407

Query: 371 QGAMFDVIAK-FMNSNMTSQAAVQALAKAAKT 401
           + A+   + + FM+ +++ + A + LA  A+T
Sbjct: 408 KDAIVAEVQRFFMDRSISEEQAQKRLATIART 439


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.127    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,109,988
Number of extensions: 42040
Number of successful extensions: 155
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 315
Effective length of database: 1,207,925
Effective search space: 380496375
Effective search space used: 380496375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)