BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0044.p
         (503 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310431|ref|YP_003774523.1| glucose-6-phosphate 1-dehydroge...   521   e-149

>gi|300310431|ref|YP_003774523.1| glucose-6-phosphate
           1-dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 488

 Score =  521 bits (1343), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 259/474 (54%), Positives = 330/474 (69%), Gaps = 6/474 (1%)

Query: 11  FNFVLFGATGDLAMRKILPALFSAHLDGKLHQEGRIICVAKQELNQESYLDWVHTQSGLY 70
           F+ VLFG TGDL+MRK+LPAL++      L  E RI+C+ + E  +E ++  V   S  +
Sbjct: 6   FDLVLFGGTGDLSMRKLLPALYARDRARDLPPEARIVCLGRDEKTREEFIQIVEKDSKPH 65

Query: 71  VSEGIANQNADKWQSFLRRITYVVLDATRAADYALLGEQLNNQA--VTVYYLATSPKLFE 128
           V    AN +   W+ F  R+ Y  ++A   A +  L E L +      V+YLAT P LF 
Sbjct: 66  VPA--ANLDKAVWERFCNRLQYASVNAKDGASFVHLKEALRDTEGLARVFYLATPPSLFA 123

Query: 129 PICNHLAASSIALDNARVVLEKPLGHDLQSSRAINDAVARVFAEDQIYRIDHYLGKESVQ 188
            IC +L+   +    +RVVLEKPLG DL S+R IN  V R F E QI+RIDHYLGKE+VQ
Sbjct: 124 SICENLSKGGLVTPASRVVLEKPLGRDLASARDINAQVGRYFQESQIFRIDHYLGKEAVQ 183

Query: 189 NLLALRFANSLFEPLWRRESIEHVQLTIAEQLGVEGRGEFYDGTGALRDMVQNHLLQLLC 248
           NLLALRF N LFEPLWRRE I  VQ+TIAE+LGV GR ++YD +GALRDM+QNHLLQLLC
Sbjct: 184 NLLALRFGNVLFEPLWRREWISDVQITIAEELGVGGRFDYYDTSGALRDMLQNHLLQLLC 243

Query: 249 MVAMEPPTSLDANAIRDEKVRVLRALKPFSRDDLESRAVRGQYAAGAVRGQAVGGYHQEA 308
           +VAMEPP S  A+A+RDEK++VLR+LK F+   L    VRGQY AG V G AV GY +EA
Sbjct: 244 IVAMEPPVSNSADAVRDEKLKVLRSLKRFTPTTLAMNVVRGQYRAGHVNGVAVPGYRKEA 303

Query: 309 GIAPQSKTESFIALHAEINNWRWAGVPFFLRTGKRLAERTAEIVITFKPIPHAILPMPQG 368
              P S+TE+++A+ AEI+ WRWAGVPF+LRTGKR+A+  AEIV+ FK +PH+I      
Sbjct: 304 DANPDSRTETYVAVKAEIDTWRWAGVPFYLRTGKRMADSLAEIVVRFKSVPHSIFAHQN- 362

Query: 369 VENSNRLVIRLQPEESIQLHCFAKQPGDSMTIQPVALDLAFDQAFKQKRADAYERLLLDV 428
            +  N LVIRLQP+E + ++  AKQPGD M ++PV L+L F + FK  R DAYERLLLDV
Sbjct: 363 -DTPNCLVIRLQPDEGLHMNLMAKQPGDGMRLRPVELELDFREKFKTPRMDAYERLLLDV 421

Query: 429 IRGNLALFVRRDEQEAAWRWVEPLLNHWQSTAALPKSYLAGSWGPSASSAMMSR 482
           +RG+L LF+R DE EAAW WVEP+LNHW    A P  Y AG+WGP+A+SA++ R
Sbjct: 422 LRGHLTLFMRSDELEAAWEWVEPILNHWDQQEADPVPYNAGTWGPAAASALIGR 475


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,402,826
Number of extensions: 55312
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 414
Effective length of database: 1,198,455
Effective search space: 496160370
Effective search space used: 496160370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)