BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0036.p
         (250 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310202|ref|YP_003774294.1| DNA primase [Herbaspirillum ser...   310   7e-86

>gi|300310202|ref|YP_003774294.1| DNA primase [Herbaspirillum
           seropedicae SmR1]
          Length = 598

 Score =  310 bits (794), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 160/247 (64%), Positives = 196/247 (79%), Gaps = 4/247 (1%)

Query: 1   VREKGAEAFEQQIKEAMPLSQFLIKEVVGDNDMTTPEGRARAQFDAKPMLQALPPSSLRL 60
           VRE GA AFE+QI+EA+PLSQFL++E++G+ND+ TPEGRA AQF AKP+LQALP S+LRL
Sbjct: 351 VREMGAPAFEEQIREALPLSQFLLREIIGENDLRTPEGRAHAQFAAKPLLQALPASALRL 410

Query: 61  QIVRSLAQVTQTTPAEIEALFELSRPVVQASTRRPPPRSKRMAPVGLERQIVRLLVAHPA 120
           QIVRS+AQ TQ+TPAE+E LFEL +PV  A  R  P RSKR APVGLERQI+RLLVAHP 
Sbjct: 411 QIVRSVAQATQSTPAELEVLFELEKPV--ARVRAAPARSKRTAPVGLERQIMRLLVAHPQ 468

Query: 121 LASDLDNDTLMVVGHHAPDHAQMVTQLVEACRSMGEQANFATLVELLRDGGADFESLIAE 180
           LA+DLD   L  +   APD A+M+T LV   + MGEQANFA LVE LR+GG +F+S+IAE
Sbjct: 469 LAADLDAGALEAIARIAPDQAEMLTHLVGVAQGMGEQANFAALVEHLREGGPEFDSMIAE 528

Query: 181 IAAETEAESEFDVVRQEMAGAVRQMKMRQVEDEMKQLSIAGLRNEIAQSRYRELMQRKEH 240
           IAAE+  ESEFDVVR EM GA+RQ ++R +++EM+ L  + LR E  ++RYRELMQRKE 
Sbjct: 529 IAAES--ESEFDVVRAEMGGAIRQARIRALDEEMQMLVTSNLRTEEDRNRYRELMQRKEW 586

Query: 241 LKRLTGA 247
           LKR  GA
Sbjct: 587 LKRQAGA 593


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.130    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 677,421
Number of extensions: 24487
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,226,865
Effective search space: 204886455
Effective search space used: 204886455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)