BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0032.p
         (398 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310199|ref|YP_003774291.1| hypotehtical protein [Herbaspir...   623   e-180

>gi|300310199|ref|YP_003774291.1| hypotehtical protein
           [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score =  623 bits (1607), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 291/372 (78%), Positives = 331/372 (88%)

Query: 26  GKSVVLIDHASKLAEKIRISGGGRCNFTNIGATPQNFLSQNPHFCKSALSRYTPQDFLAL 85
           G+ VVLIDHA KLAEKIRISGGGRCNFTN+GA PQ++LSQNPHFC+SALSRYTPQDF+ L
Sbjct: 31  GRRVVLIDHAGKLAEKIRISGGGRCNFTNVGAGPQHYLSQNPHFCRSALSRYTPQDFIGL 90

Query: 86  VKRYQISFHEKHKGQLFCSDSSEEIIAMLKAECDSGHVEWRMPCGVASVGKDGELFRLET 145
           VKR++I FHEKHKGQLFC DS+E+IIAMLKAECD+G+V WRMPC V  VGK  E FR+ T
Sbjct: 91  VKRHRIGFHEKHKGQLFCDDSAEDIIAMLKAECDAGNVSWRMPCTVQEVGKSSEHFRIAT 150

Query: 146 DSGEILARHVVIATGGLSIPKIGATDFAYRIAKQFEVQLVETRPGLVPLTFDGAGWQPFV 205
            +GEI A  +VIATGGLSIPKIGATDFAYRIA+QF+++LVETRPGLVPLTFDG  WQ   
Sbjct: 151 SAGEIQAASLVIATGGLSIPKIGATDFAYRIARQFDLKLVETRPGLVPLTFDGKAWQSLT 210

Query: 206 DLAGIALEVEVETGVKKERGYFLEDLLFTHRGLSGPAILQISSFWQQGASLTLNLLPQID 265
           +LAGIALEVEVETG KKERG+FLEDLLFTHRGLSGPAILQISS+W+ G  LTLNLLPQ+D
Sbjct: 211 ELAGIALEVEVETGAKKERGHFLEDLLFTHRGLSGPAILQISSYWKPGTPLTLNLLPQLD 270

Query: 266 VADTLIEGKTTLKKNLGNLLGQWLPARLADGLLKANGFDGTARIADMPDKQLRQVGEALN 325
           VA+TLI+GK T+KKNLGN+L QWLP RLA+G LK NGFD   RIADMPDK L+++G++LN
Sbjct: 271 VAETLIDGKGTIKKNLGNILAQWLPNRLAEGWLKINGFDAGGRIADMPDKSLKKLGDSLN 330

Query: 326 RWTIKPNGSEGYRKAEVTMGGIDTRELSQQSMMVNKVPGLHFIGEAVDVTGWLGGYNFQW 385
           RW I P+GSEGYRKAEVT+GG+DTRELSQQ+MM NKVPGLH IGEA+DVTGWLGGYNFQW
Sbjct: 331 RWVILPSGSEGYRKAEVTLGGVDTRELSQQTMMANKVPGLHVIGEAMDVTGWLGGYNFQW 390

Query: 386 AWASGVAAGQAI 397
           AWASGVAAG A+
Sbjct: 391 AWASGVAAGSAV 402


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,249,656
Number of extensions: 50559
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 311
Effective length of database: 1,207,925
Effective search space: 375664675
Effective search space used: 375664675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)