BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0029.p
         (111 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310196|ref|YP_003774288.1| ATP-dependent DNA helicase [Her...   157   2e-40

>gi|300310196|ref|YP_003774288.1| ATP-dependent DNA helicase
            [Herbaspirillum seropedicae SmR1]
          Length = 1158

 Score =  157 bits (397), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/105 (73%), Positives = 90/105 (85%)

Query: 7    LAAVIRAQAVNMLAQPALERFFNPALHRHARDEMEIVTADGVLRCDRVVVFDDEVWVLDY 66
            +A V+ AQA  +LAQP LERFFNPALHR AR+EMEIVT +G++R DRVV+FDDE+WV+DY
Sbjct: 1053 MAQVVHAQAREVLAQPQLERFFNPALHRWARNEMEIVTPNGLMRLDRVVMFDDELWVIDY 1112

Query: 67   KRNLLDSERVAYQAQLARYRTALLSVFSDKQIRSALITADGRLWE 111
            KR LLDSER  Y AQL RYR+AL+SVFSDKQIRSALITA+G L E
Sbjct: 1113 KRRLLDSERADYAAQLGRYRSALMSVFSDKQIRSALITAEGALIE 1157


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 348,001
Number of extensions: 12400
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 111
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 38
Effective length of database: 1,274,215
Effective search space: 48420170
Effective search space used: 48420170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 124 (52.4 bits)