BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0028.p
         (382 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310196|ref|YP_003774288.1| ATP-dependent DNA helicase [Her...   483   e-137

>gi|300310196|ref|YP_003774288.1| ATP-dependent DNA helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 1158

 Score =  483 bits (1243), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 237/322 (73%), Positives = 271/322 (84%), Gaps = 4/322 (1%)

Query: 1   MLLVKKRRHLIAYESALREAGIPFVSDKRGGLLDSLEIADLIALLTFLITPNDTRALAHV 60
           MLLV+KR HL AYESALR AGIPF+SDKRGGLL+SLEIADLIALLTFLITPNDTRALAHV
Sbjct: 626 MLLVRKRTHLAAYESALRAAGIPFISDKRGGLLESLEIADLIALLTFLITPNDTRALAHV 685

Query: 61  LKSPIIGAADEDLIALAQRSES----DWWKRVLAAQQSGSASAAIARAAHLLAQWLDAAP 116
           LKSPII A D+DL+ +A+R+       WW+++ A QQ G+ASAA+ RA  LL +WL AAP
Sbjct: 686 LKSPIISATDDDLVQIARRAAQAEGGHWWRQLQAMQQEGAASAALVRAVTLLQRWLLAAP 745

Query: 117 HYPVHDLLDRILHEGQLAARYAQAVAPSMRNQALGNIEAFVELALNLDAGRYPSLPKFID 176
           H PVHDLLD ILH+G+L ARYAQ  +P  R+Q LGNI AFVEL+LN+DAGRYPSLPKFID
Sbjct: 746 HLPVHDLLDMILHQGELVARYAQHASPLTRSQTLGNIAAFVELSLNMDAGRYPSLPKFID 805

Query: 177 ALRVLQRHAESDAPDEASIDAAADAVRILTVHSAKGLEAPVVVVMDTNHSDPANDNIGIL 236
           ALRVLQR A  DAPDEAS+DA+ DAVRILTVHSAKGLEAPVV ++D NHSD   DN+GIL
Sbjct: 806 ALRVLQRSAGGDAPDEASVDASGDAVRILTVHSAKGLEAPVVAILDANHSDSVEDNLGIL 865

Query: 237 CDWPQDEDAPTHFSAFGRKSERGTARDRWFDAEEHFKMQEDWNLLYVALTRAKQLLIVSG 296
           C WPQDEDAPTHFSAFGR+SERG+ARD  F+ EE  + QEDWNLLYVA+TRAKQLL+VSG
Sbjct: 866 CAWPQDEDAPTHFSAFGRRSERGSARDPLFEEEETLRTQEDWNLLYVAVTRAKQLLLVSG 925

Query: 297 VAGAKGALEGGIQEGSWYSRLF 318
           VAG +GA  GG+ +GSWY RLF
Sbjct: 926 VAGTRGADAGGVVQGSWYQRLF 947


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,123,195
Number of extensions: 43954
Number of successful extensions: 168
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 295
Effective length of database: 1,207,925
Effective search space: 356337875
Effective search space used: 356337875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)