BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0027.p
         (514 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310196|ref|YP_003774288.1| ATP-dependent DNA helicase [Her...   613   e-176
gi|300309775|ref|YP_003773867.1| ATP-dependent DNA helicase [Her...    65   1e-11

>gi|300310196|ref|YP_003774288.1| ATP-dependent DNA helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 1158

 Score =  613 bits (1580), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 335/492 (68%), Positives = 375/492 (76%), Gaps = 17/492 (3%)

Query: 14  AAYEINGRPAEAAAFTAAACDPRQSVVVEACAGSGKTWLLVARMLRLLLAGAQPAELLAI 73
           AAYE+NG   +AA FT AACDPR SVVVEACAGSGKTWLLVARMLRLLLAGAQ  ELLAI
Sbjct: 9   AAYEVNGEAVDAAVFTRAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGAQAPELLAI 68

Query: 74  TFTRKAAQEMRERLMELLRELTLAPADQARQLLLERGVDADDLPRLMPLARSLYEQILAG 133
           TFTRKAAQEMRERL+ELL EL LA    A  LL ERGV   DLPRL+PLAR LYE+IL+ 
Sbjct: 69  TFTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARGLYERILSS 128

Query: 134 QQGLSIDTFHSWFARLLQIAPLASGVPHGYALTEKNGEIMNEAYRRFMQAVQKPAQQAIK 193
           +Q LSIDTFHSWFARLLQIAPLASGVP+GY LTEKNGE+++EAYRRFMQ +++P    IK
Sbjct: 129 EQSLSIDTFHSWFARLLQIAPLASGVPYGYTLTEKNGELLDEAYRRFMQTLREPEGAHIK 188

Query: 194 LALLELYDLAGDSGARNLLDSFLDKRAEWWAATMPP---------LSSEEAPLQWLEELC 244
            ALLELY+LAGD  AR LLD+F+DKRAEWWAAT              +  APL+WL+ LC
Sbjct: 189 AALLELYELAGDFNARQLLDAFIDKRAEWWAATQDDEQEGEEGAEEHAAPAPLRWLQALC 248

Query: 245 GPDAARARARXAARDARLTVWSDEGLKARLYEISSLLGKGTATNQKRAVAIETLVSGEAS 304
           G D        A RDARL++W +  L AR  +++ LLG+G + NQ RAVAIE+ +S   +
Sbjct: 249 GAD--------AQRDARLSLWEEHALVARASQLAILLGQGGSANQARAVAIESALSAGPA 300

Query: 305 AEQFVALATQFYDDNGKPRGNTKTKDLKAALSKHYGVDEDVAVSLFDEVFELTGNELRQL 364
            E F AL +QF+DD  KPR N K K L AAL +H+   ED A+  F+  F   G  LR+L
Sbjct: 301 LEHFDALYSQFFDDKDKPRKNGKVKSLLAALVQHFEASEDAALVAFEMEFNAVGEALRKL 360

Query: 365 QRRSAEGIVLKLNRALFTAGRAYLDAYQEVKAEQRVFDFADLEWHAYRLLTNEESAAYLQ 424
           Q RS E  VL+LN ALFTAGRAYL  YQEVKAEQRV DFADLEW AYRLL NE SAAYLQ
Sbjct: 361 QGRSKEKDVLQLNAALFTAGRAYLACYQEVKAEQRVLDFADLEWQAYRLLRNEASAAYLQ 420

Query: 425 SRLDARYKHILLDEFQDTNPLQWSIVRAWLRAYGGDAAQPSVFVVGDPKQSIYRFRRAEP 484
           +RLDARYKHILLDEFQDTNPLQW IVR WL AYGGDAAQPSVFVVGDPKQSIYRFRRAEP
Sbjct: 421 TRLDARYKHILLDEFQDTNPLQWCIVRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEP 480

Query: 485 RVFAAARARARA 496
           RVF AAR   RA
Sbjct: 481 RVFVAAREMLRA 492


>gi|300309775|ref|YP_003773867.1| ATP-dependent DNA helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 759

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 48/83 (57%), Gaps = 9/83 (10%)

Query: 400 VFDFADLEWHAYRLLTNEESAAYLQSRLDARYKHILLDEFQDTNPLQWSIVRAWLRAYGG 459
           V DFA+L    Y LL+  +    L+    +R++HIL+DEFQDTN LQ+     WL+   G
Sbjct: 183 VVDFAELLLRTYELLSRNQP---LREHYQSRFRHILVDEFQDTNDLQYK----WLKLMAG 235

Query: 460 DAAQPSVFVVGDPKQSIYRFRRA 482
                +VF VGD  QSIY FR A
Sbjct: 236 Q--HNAVFAVGDDDQSIYAFRGA 256


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,363,673
Number of extensions: 53179
Number of successful extensions: 224
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 2
Length of query: 514
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 425
Effective length of database: 1,198,455
Effective search space: 509343375
Effective search space used: 509343375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)