BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0026.p
         (899 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310195|ref|YP_003774287.1| inactivated superfamily I helic...   942   0.0  

>gi|300310195|ref|YP_003774287.1| inactivated superfamily I helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 924

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/935 (57%), Positives = 652/935 (69%), Gaps = 49/935 (5%)

Query: 1   MLHSPLLISPSVDFWPQTAVALLEVDH---MLGAAVGAGSRDFSGYQVVVPAFSHAVHWR 57
           ML + + I PS DFW Q    LL           A    + DFSG Q++VPAFSHA +++
Sbjct: 1   MLSATVPIPPSPDFWQQAVRQLLHPGQPLGQALQAQAGAALDFSGVQLMVPAFSHAQNFK 60

Query: 58  AALARAIQRRSPQQAGFIPPRINTMAGWMAMQAPQPQQ--DDSERLMQLYAQLRQHGWLK 115
           AAL+R ++R       +I PRINT++G +AMQ P       +SERLMQLYAQLR+HGWLK
Sbjct: 61  AALSRELRR------PYIAPRINTLSGLLAMQPPGEDAPPSESERLMQLYAQLREHGWLK 114

Query: 116 X-----------PLAQTLLSLSDELTQALLPAMERAPGD--ADERWQAALAQLPP----S 158
                       PLA TLL LSDEL+ ALLP +  + G+     RW  ALAQL      S
Sbjct: 115 KMFSARRNADLLPLAHTLLDLSDELSLALLPEIRASAGEDAIAGRWTQALAQLLAPLAPS 174

Query: 159 ARSMLSDEAQLVWSIWQSQLDGNDKTVQRYKRMLELARPGAHAPLAPLMWISPVAPEPME 218
           A +MLS+EA LVW IW+ QLD  D+ VQR+  ML+LA   A A L PL+W+SP  PEP++
Sbjct: 175 AHAMLSEEAALVWQIWKIQLDARDRIVQRFDAMLDLA---ARASL-PLIWVSPTEPEPLD 230

Query: 219 LAFLEAYGEHAEVQPVQIDW-RGPDIPL--LYQTAWPELCDAPLAPTP---------DDL 266
            AFL AY +H  V+ V +DW R    PL  LY +AW EL      P P            
Sbjct: 231 AAFLAAYAQHQPVRIVTLDWSRAAMAPLYPLYLSAWGELVREEEGPAPAYEEFAASAPPE 290

Query: 267 FAPQMDAPTLALCPAASLEDASLQSAQIVLDWLRQGKDDIAIVAQDRVSARRLRALLERA 326
            +    +    LCPA+ LE+A++QSAQIVL WL+QGK++IAIVAQDRV+ARRLRALLERA
Sbjct: 291 ASAAAPSALPLLCPASDLENAAVQSAQIVLRWLQQGKNEIAIVAQDRVTARRLRALLERA 350

Query: 327 QVSVADETGWKLSTTRAAAAMAAWCDVVTSRGETTALLDLLKSPFIFAGMADKSAAVMQI 386
           QVSVADETGWKLSTTRAAAA+AAW D+V++RGET ALLDLLKSPF+F     ++  VM+I
Sbjct: 351 QVSVADETGWKLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVFPADPGRADRVMRI 410

Query: 387 EWQLRRENVSGEWRSVQAVFKGGSLAAEV--LQAVAAQAALFDGRKSLIDWGACAQQLLD 444
           E +LRR N++G+W+++Q  F       ++  +  +A QAA F GRK+L  W    ++L +
Sbjct: 411 EARLRRANIAGDWQALQTAFADARDPDDLQCILTLARQAARFGGRKTLSQWCETQRRLCE 470

Query: 445 ALDMRGALAQDIAGQQVLQLLDDLGARQEDADGGELFSFSEWRALLNLQLDAVTFMPPIA 504
           AL M  AL +D AGQQ L +LD++ A Q      + FSF+EWRALLNL+LDA ++MPPI 
Sbjct: 471 ALGMDAALREDGAGQQCLLMLDEIAAEQGALQ--DQFSFAEWRALLNLRLDATSYMPPIK 528

Query: 505 DRRIVMLPLNGARLRNFDAVLVIGADAEHLPSQPQETLFFSNAVRHELGLPTRLSRQHQQ 564
           DRR+VMLPLNGARLR FDAVLVIGADA HLPS PQETLFFSNAVR EL L TR +RQ QQ
Sbjct: 529 DRRVVMLPLNGARLRRFDAVLVIGADAAHLPSPPQETLFFSNAVRRELNLATRATRQRQQ 588

Query: 565 LRDLTELLCANREVVLCWQTHKDGEPNPKSPWLERLELCLAKAGMEPLRELRHDLPLHEL 624
           LRDL ELLC N EVVLCWQTH+DGEPNP SPW+ERLEL LA+ G  PL+ L    P+ +L
Sbjct: 589 LRDLVELLCINPEVVLCWQTHQDGEPNPVSPWIERLELKLAQQGAAPLQRLELPPPVQQL 648

Query: 625 LAAPSIMPAPSAAELTPARLSASAYNRLVACPYQFFAQHMLRVNVMDELSDMPEKRDYGG 684
            A PS MPAPSA +L P  LSAS +   +ACPYQFFAQ MLRV VMDELS+MPEKRDYG 
Sbjct: 649 RALPSSMPAPSAPDLLPPTLSASGFGSFLACPYQFFAQRMLRVAVMDELSEMPEKRDYGS 708

Query: 685 WLHEILMKYHEALRDAKTPVGQRAALLATISDDVFAKAIREHPAALGYEARWRKVMPAYL 744
           WLHEIL KYH  LRD  TP+  RAALLA  S++VF + ++ HPAAL + ARW+KVMPAYL
Sbjct: 709 WLHEILYKYHAHLRDNDTPLPARAALLAQFSEEVFQREMQRHPAALAFHARWQKVMPAYL 768

Query: 745 VWANEREAQGWHFVLGELPLQHALAWPDGGIELYGRLDRVDENAEGERAVLDYKTSSLPS 804
           +WANEREA+GW F  GE      L W DGGIELYGRLDRVD N +G+RA+LDYKT S  S
Sbjct: 769 LWANEREAEGWQFAFGEESQSQTLQWSDGGIELYGRLDRVDRNEQGQRALLDYKTRSAAS 828

Query: 805 LVAKLKNAEDLQLPFYGLLSGRTMAAAHYVALEPSRD-KTGDVAAPDFEARQQALQQQII 863
           L  K+K  +D QL FYGLL+G  +  AHYVALE   D KTGD AAPDF  RQ+ LQQQI 
Sbjct: 829 LRQKVKEDDDHQLAFYGLLAGGVIEHAHYVALELGPDKKTGDAAAPDFARRQKMLQQQIT 888

Query: 864 TVVQAIGNDAPLPANGIESVCQYCDVRGLCRKGVW 898
           T +QA+ + A LPANGIESVCQYC++RGLCRKG W
Sbjct: 889 TTMQAVAHGAALPANGIESVCQYCEMRGLCRKGAW 923


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,919,526
Number of extensions: 127853
Number of successful extensions: 407
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 1
Length of query: 899
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 805
Effective length of database: 1,174,780
Effective search space: 945697900
Effective search space used: 945697900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 135 (56.6 bits)