BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0023.p
         (76 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC t...    70   3e-14
gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC t...    69   1e-13
gi|300314071|ref|YP_003778163.1| amino acid ABC transporter peri...    68   1e-13

>gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 404

 Score = 70.1 bits (170), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/54 (72%), Positives = 43/54 (79%), Gaps = 1/54 (1%)

Query: 1   MLQAQASKAQILGLANAGGDTINSIKAANEFGINKTMKLAXANEFGINKTMKLA 54
           +LQAQ+SKAQILGLA AGGD IN+IKAANEFG+NKTMKLA    F IN T  L 
Sbjct: 216 LLQAQSSKAQILGLAVAGGDVINAIKAANEFGVNKTMKLAGLLIF-INDTHSLG 268


>gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 404

 Score = 68.6 bits (166), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/39 (84%), Positives = 36/39 (92%)

Query: 1   MLQAQASKAQILGLANAGGDTINSIKAANEFGINKTMKL 39
           +LQAQASKAQILGLANAG DT+NSIKAA EFG+ KTMKL
Sbjct: 216 LLQAQASKAQILGLANAGEDTVNSIKAAKEFGVTKTMKL 254


>gi|300314071|ref|YP_003778163.1| amino acid ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score = 68.2 bits (165), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/40 (82%), Positives = 37/40 (92%)

Query: 1   MLQAQASKAQILGLANAGGDTINSIKAANEFGINKTMKLA 40
           +LQAQ+SKAQI+GLANAGGD INS+KAANEFGI KT KLA
Sbjct: 214 LLQAQSSKAQIIGLANAGGDFINSVKAANEFGITKTAKLA 253


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 188,854
Number of extensions: 4638
Number of successful extensions: 22
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 3
Length of query: 76
Length of database: 1,619,870
Length adjustment: 47
Effective length of query: 29
Effective length of database: 1,397,325
Effective search space: 40522425
Effective search space used: 40522425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 123 (52.0 bits)