BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0022.p
         (122 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314071|ref|YP_003778163.1| amino acid ABC transporter peri...   167   2e-43
gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC t...   155   1e-39
gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC t...   147   2e-37
gi|300312372|ref|YP_003776464.1| branched-chain amino acid ABC t...    84   4e-18

>gi|300314071|ref|YP_003778163.1| amino acid ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score =  167 bits (423), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 80/95 (84%), Positives = 88/95 (92%)

Query: 27  QISGEVVKIGLITDLSGVYIDIDGQGGVEAIKMAIADFGGSVNGKKIELITADHQNKADI 86
           QISG+V+KIG ITD+SGVY DIDGQGG EAIKMAIAD GG++NGKKIEL+ ADHQNKAD+
Sbjct: 25  QISGDVIKIGFITDISGVYSDIDGQGGAEAIKMAIADMGGAINGKKIELLVADHQNKADV 84

Query: 87  AASKAREWFDQQGVDMLIGGTNSGTSLAMAKVAGE 121
           AASKAREWFDQQGVDMLIGGTNSGT+LA AKVA E
Sbjct: 85  AASKAREWFDQQGVDMLIGGTNSGTALASAKVAAE 119


>gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 404

 Score =  155 bits (391), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/120 (65%), Positives = 96/120 (80%), Gaps = 4/120 (3%)

Query: 3   VKMTAIAATVVAACAA-GFAGPAAAQISGEVVKIGLITDLSGVYIDIDGQGGVEAIKMAI 61
           ++  A++AT   ACA  G A   +AQ +G+ +KIG ITD+SG Y D DGQGGVEAI+MAI
Sbjct: 5   IRRAALSAT---ACALLGAAILPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMAI 61

Query: 62  ADFGGSVNGKKIELITADHQNKADIAASKAREWFDQQGVDMLIGGTNSGTSLAMAKVAGE 121
           AD GG++NGKK+EL+ ADHQNKADIAA+KAREWFD+ GVDML+GG NS  SLAM KVAGE
Sbjct: 62  ADAGGAINGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGE 121


>gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 404

 Score =  147 bits (371), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/112 (65%), Positives = 92/112 (82%), Gaps = 2/112 (1%)

Query: 12  VVAACA-AG-FAGPAAAQISGEVVKIGLITDLSGVYIDIDGQGGVEAIKMAIADFGGSVN 69
           + AACA AG F+G A AQ+S + V+IG ITD+SG Y D DG GG+EAI+MA+ADFGG+V 
Sbjct: 10  LAAACAIAGIFSGAALAQVSNDAVRIGFITDMSGPYADTDGLGGLEAIRMAVADFGGTVL 69

Query: 70  GKKIELITADHQNKADIAASKAREWFDQQGVDMLIGGTNSGTSLAMAKVAGE 121
           GK IE+I+ADHQNKADIAA++AREW D++G+DMLIGG NS T+L+M KV  E
Sbjct: 70  GKPIEVISADHQNKADIAATRAREWADERGLDMLIGGVNSATALSMNKVMAE 121


>gi|300312372|ref|YP_003776464.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 410

 Score = 84.0 bits (206), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 65/108 (60%), Gaps = 5/108 (4%)

Query: 15  ACAAGFAG---PAAAQISGEVVKIGLITDLSGVYIDIDGQGGVEAIKMAIAD-FGGSVNG 70
           AC    A    PA AQ     VKIG++TD+SG Y  + GQG V A KMA+ D       G
Sbjct: 16  ACTVSLAATAIPAWAQ-DANTVKIGVLTDMSGPYSAMGGQGSVVAAKMAVEDCLKNECKG 74

Query: 71  KKIELITADHQNKADIAASKAREWFDQQGVDMLIGGTNSGTSLAMAKV 118
            KIE+++AD+QNK D+  ++AREW D+  V+ +   TNS  +LA+ K+
Sbjct: 75  MKIEILSADNQNKPDVGVTRAREWLDRDKVEAIADLTNSSVALAVQKL 122


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 314,167
Number of extensions: 11889
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 4
Length of query: 122
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 48
Effective length of database: 1,269,480
Effective search space: 60935040
Effective search space used: 60935040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)