BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0017.p
         (364 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310190|ref|YP_003774282.1| Na+-driven multidrug efflux pum...   469   e-133

>gi|300310190|ref|YP_003774282.1| Na+-driven multidrug efflux pump
           protein [Herbaspirillum seropedicae SmR1]
          Length = 454

 Score =  469 bits (1208), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 274/361 (75%), Positives = 310/361 (85%)

Query: 1   VKQGLWLAFFLSCIGCLALLFSPVFLSFAQASPELAEKATLYLRIEALALPATLGFRVYA 60
           V+QG+WLA FLS IG L L+FSP+FLS A+ASPEL EKATLYLRIEALALPATL FRVY+
Sbjct: 87  VRQGMWLAVFLSVIGALVLMFSPLFLSVAKASPELVEKATLYLRIEALALPATLFFRVYS 146

Query: 61  ALNNAISRPKMVMAIQIGALLLKIPLNAWFIFGGLGLPAFGGPGCAIATSLIAWLMLLTG 120
           ALN AI+RPKMVMAIQ+  LLLK+PLNA  IFGGLGLPAFGGPGCAIAT+LIAWLM+L  
Sbjct: 147 ALNTAIARPKMVMAIQVCGLLLKLPLNALLIFGGLGLPAFGGPGCAIATTLIAWLMMLAA 206

Query: 121 WMLVRGAPIYRELRVFGSGFVAPQWKAQRSLLKLGIPMGLSYFIEVTAFTLMAIFIARLG 180
           W+LV   P+YR L++FG GFVAP WK  R LL LGIP+G+SYFIEVTAFTLMA+FIARLG
Sbjct: 207 WLLVARLPVYRPLKLFGRGFVAPSWKTLRRLLWLGIPIGMSYFIEVTAFTLMAVFIARLG 266

Query: 181 AVAVAGHQITANVGTVLYMLPLSLANATGTLVAQAIGARDWQTAKKISRAGIRLSAILSV 240
           AV VAGHQITANVGTVLYMLPLS+A+AT TLVAQAIG  ++  AKKI  AGIRL+  LSV
Sbjct: 267 AVPVAGHQITANVGTVLYMLPLSIASATSTLVAQAIGGGNFAVAKKIGNAGIRLAIALSV 326

Query: 241 LIGVAVWFAREQIIRAYTPDEVIIASALPLFLFIAFYQLFDSLQVTTAFVLRAYKVAVIP 300
           L+G+ V+  R QIIRAYTPD +II +ALPLFL+IAFYQLFDSLQVTTAFVLRAYKVAV+P
Sbjct: 327 LVGLVVYCLRGQIIRAYTPDPLIIGAALPLFLYIAFYQLFDSLQVTTAFVLRAYKVAVVP 386

Query: 301 TVIYAVALWGIGLGGGYILGLDPFGVSPAWLHGAAGFWLGNSASLGLVAFFLIWYLRVIQ 360
           TVIYAV LWG+GLGGGY+LGLDP G++P  L G AGFWL NSASLGLV   L++YLR IQ
Sbjct: 387 TVIYAVTLWGVGLGGGYLLGLDPLGLTPPNLLGPAGFWLANSASLGLVGIGLLYYLRHIQ 446

Query: 361 R 361
           R
Sbjct: 447 R 447


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.143    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,022,988
Number of extensions: 37814
Number of successful extensions: 196
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 278
Effective length of database: 1,212,660
Effective search space: 337119480
Effective search space used: 337119480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)