BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0012.p
         (218 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312115|ref|YP_003776207.1| hypothetical protein Hsero_2805...    70   2e-13

>gi|300312115|ref|YP_003776207.1| hypothetical protein Hsero_2805
           [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score = 69.7 bits (169), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 109/214 (50%), Gaps = 19/214 (8%)

Query: 3   HSDFAAFAKKYKSKFRKISAATKGEHEADDVQAEAWLMAEKIKAKQGFEIDFLNPAHVDL 62
           +  F  F  +  + FR++    +G+ E +++Q+ AW++A ++  K+  EIDF N    D 
Sbjct: 2   YQQFKKFLSEKIADFRRMVRQARGQVELEELQSSAWVVAAELGEKRKSEIDFSNKQDQDW 61

Query: 63  LFSYLYQQLVNYDEKTIRMAVRLD---AWDYGDDPEHDSHPLLNKLRSDPADDPL-AMLE 118
           + + +Y Q V    K++R AV +D   AW  GDD   D   L + L +    DPL A+L 
Sbjct: 62  ILATVYNQTVR-PGKSVRYAVSIDQPAAW--GDD---DLPSLADTLPAPENSDPLTALLH 115

Query: 119 LKE----AENRELHVSPHHSRAAAYLKLLEHCDNNIAVLATYLLISTSWCYRCYNRARHT 174
           L+     A   +L ++  +S+AA Y   LE  + N+  L+T+L IS     +  +RA  +
Sbjct: 116 LERLEEIANTNDLSLAATYSQAATYAISLEKFE-NVNSLSTFLAISGPTLVQRISRAAAS 174

Query: 175 VERQMQL---PETLKSDFMPRTWRKFQLIRTSLP 205
           ++ Q  +    E +   F+P+     +L ++ LP
Sbjct: 175 LKVQDSIFDGIERIPRSFIPKRG-SVKLSKSQLP 207


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 624,963
Number of extensions: 23502
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,231,600
Effective search space: 167497600
Effective search space used: 167497600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)