BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0009.p
         (323 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310183|ref|YP_003774275.1| site specific integrase/recombi...   517   e-148
gi|300313582|ref|YP_003777674.1| site-specific integrase/recombi...   134   1e-32

>gi|300310183|ref|YP_003774275.1| site specific
           integrase/recombinase [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  517 bits (1331), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 250/302 (82%), Positives = 270/302 (89%)

Query: 22  PKVQATGASLAAIDEFCDTLWLEDGLAKNSLEAYRRDMTLFAHWLQTERRKDLLATQAED 81
           PK++A   S  AIDEFCD+LWLEDGL+KN+LEAYRRDMT +AHWL  ER K L  TQAED
Sbjct: 6   PKIEAPAVSREAIDEFCDSLWLEDGLSKNTLEAYRRDMTRYAHWLYQERAKALYETQAED 65

Query: 82  LNAYFAARHADTKASSSNRRLAVLKRFFLLALRQNRISEDPCLRLRSAKQPPRFPKVLSE 141
           LNAYFAARH  TK SSSNRRLAVLKRFF LALRQ+ ++ DPCL+LRSA+QP RFPK LSE
Sbjct: 66  LNAYFAARHDQTKPSSSNRRLAVLKRFFQLALRQHHVAADPCLKLRSARQPQRFPKTLSE 125

Query: 142 GQVEALLAAPDVTTPLGLRDRTMLELMYASGLRVSELVLLKSVEVGMNEGVLRITGKGNK 201
           GQVEALLAAPDV+TPLGLRDR M+ELMYASGLRVSELVLLKS+EVGMNEGVLR+TGKG+K
Sbjct: 126 GQVEALLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSK 185

Query: 202 TRLVPFGEEARSWIERYLREARLLILEGQVDDALFVTARGGAMTRQMFWTLIKKYALQGD 261
           TRLVPFGEEA SW+ RYL EAR  IL+GQVDDALFVTARGG MTRQMFWTLIKKYALQ  
Sbjct: 186 TRLVPFGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAG 245

Query: 262 IRAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKKLHAEHHP 321
           + A LSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLK+LHA HHP
Sbjct: 246 VTARLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHP 305

Query: 322 RG 323
           RG
Sbjct: 306 RG 307


>gi|300313582|ref|YP_003777674.1| site-specific
           integrase/recombinase [Herbaspirillum seropedicae SmR1]
          Length = 330

 Score =  134 bits (336), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 162/316 (51%), Gaps = 22/316 (6%)

Query: 29  ASLAAIDEFCDTLWLEDGLAKNSLEAYRRDM----TLFAHWLQTERRKDLLATQAEDLNA 84
           A+   I ++   L  +  L+ +++E Y RD+    +L A   +     DL  T    +  
Sbjct: 8   ATTGLIGQYLSFLRTQRKLSDHTVEHYGRDLQELRSLLAPAGEEHADIDLRKTTQVQIRK 67

Query: 85  YFAARHA-DTKASSSNRRLAVLKRFFLLALRQNRISEDPCLRLRSAKQPPRFPKVLSEGQ 143
             A  HA    A S  R+L+  + FF     Q  ++ +P   +++ K+    PK L+   
Sbjct: 68  CAARLHARGLNARSIARKLSAWRGFFGWLSMQMDLAANPVDGVKAPKKSKPLPKALAADD 127

Query: 144 VEALLAAPD-VTTP---LGLRDRTMLELMYASGLRVSELVLLKSVEV-----------GM 188
              L++ PD V  P   L   +R M EL+Y+SGLRVSELV +   +V            +
Sbjct: 128 AIRLVSQPDPVRDPDSTLAACNRAMFELLYSSGLRVSELVGIDVADVREGGYESAGWVDL 187

Query: 189 NEGVLRITGKGNKTRLVPFGEEARSWIERYLR-EARLLILEGQVDD-ALFVTARGGAMTR 246
            E  + +TGKG K R VP G+ AR+ +  +L   ARL   +G  D  ALF+  RG  ++ 
Sbjct: 188 EEAEVTVTGKGGKKRKVPVGQAARAALADWLPLRARLRKADGGPDSHALFLNERGARISP 247

Query: 247 QMFWTLIKKYALQGDIRAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTH 306
           ++    +K +    ++ + + PH LRH+FA+H+L    DLR VQ +LGHA I+ TQ+YT 
Sbjct: 248 RVAQLRLKAHGRALEMASDVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTA 307

Query: 307 VARERLKKLHAEHHPR 322
           +  +RL +++ + HPR
Sbjct: 308 LDFQRLAQVYDQAHPR 323


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 961,374
Number of extensions: 37327
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 2
Length of query: 323
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,217,395
Effective search space: 289740010
Effective search space used: 289740010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)