BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0008.p
         (136 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310182|ref|YP_003774274.1| methylated-DNA-protein-cysteine...   142   9e-36

>gi|300310182|ref|YP_003774274.1| methylated-DNA-protein-cysteine
           S-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 178

 Score =  142 bits (358), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 71/119 (59%), Positives = 85/119 (71%), Gaps = 1/119 (0%)

Query: 9   IFSAIVHVPFGGIGIRTSAGVIVEMVTLPRHFGEKDATDAVADKAVKQILRYIDKPDYRF 68
           +FSA+VH PFGG+G+RT AG +VEMV LP H+ EKDATDAVA +AV+QI  Y+  P YRF
Sbjct: 22  LFSAVVHTPFGGMGVRTEAGALVEMVYLPPHYAEKDATDAVAAQAVQQITHYLADPAYRF 81

Query: 69  KLPLAEVGSDFQRRVWDAIASIPRGEVRTYGQIAKFIRSAPRA-APGXRARWGRLAAPT 126
            LP   VGS FQ+RVW AI +IP G+V TYGQ+AK I+SAPRA      A W  L  P 
Sbjct: 82  DLPRLSVGSAFQQRVWQAIMAIPCGQVLTYGQVAKRIQSAPRAVGQACGANWYPLVIPC 140


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 339,450
Number of extensions: 9780
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 136
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,260,010
Effective search space: 75600600
Effective search space used: 75600600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)