BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0007.p
         (217 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310181|ref|YP_003774273.1| hypothetical protein Hsero_0847...   206   1e-54

>gi|300310181|ref|YP_003774273.1| hypothetical protein Hsero_0847
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  206 bits (524), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 111/209 (53%), Positives = 140/209 (66%), Gaps = 6/209 (2%)

Query: 9   DHLVVTAPSLAEGIAYIEQTLGVS--PQAGGEHVRLGTHNALLKLGRGFYLEVIAVNPAA 66
           DHLV+TAP+L  G+A++EQ LGVS  P+ GG+HVRLGTHNALL LG GFYLEVI ++P A
Sbjct: 11  DHLVITAPTLKSGMAWVEQCLGVSMAPRIGGQHVRLGTHNALLSLGEGFYLEVITIDPNA 70

Query: 67  PVPQRARWFGLDYVAAGSKPRLATWVVRTDDIETATAASAISPGIVEEMSRGALQWRITI 126
             P R RWFG+D +   + PRLA WV RT DI  A AAS ISPG++E MSRGAL W ITI
Sbjct: 71  DAPGRPRWFGMDQLTKAAVPRLAHWVARTSDIAAAVAASPISPGMIEPMSRGALDWLITI 130

Query: 127 PSDGKLILDGVMPSLIQWNSSSHPTDNMADLGCSLVKLEGCHPQAAAIAASLAKIGL-QS 185
            +DG L  DGVMPSLIQW S  HP   + D GC L +L   HP A  + A+   IGL  +
Sbjct: 131 AADGALACDGVMPSLIQWLSQPHPATALPDRGCRLQQLLLEHPAAQQLQAAWQAIGLADA 190

Query: 186 HVDMHQPAPGQKPHMLALIQTPTGLHPLG 214
            + + +   G++  + A++ TP G   +G
Sbjct: 191 RIVLKE---GKQASLRAVVSTPHGERVVG 216


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 760,037
Number of extensions: 31732
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 136
Effective length of database: 1,236,335
Effective search space: 168141560
Effective search space used: 168141560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)