BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0005.p
         (187 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310179|ref|YP_003774271.1| TRAP-type C4-dicarboxylate tran...   336   6e-94

>gi|300310179|ref|YP_003774271.1| TRAP-type C4-dicarboxylate
           transport system small permease [Herbaspirillum
           seropedicae SmR1]
          Length = 186

 Score =  336 bits (862), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 158/186 (84%), Positives = 174/186 (93%)

Query: 2   LKFLDHLEEWLIAFLMAAATVIIFVAVLHRYASGLPIPWLQDELIQINTSWAQELCIFMF 61
           +K LDHLEEWLIAFLMAAAT IIFVAV+HRYASGL IPWLQD+LIQIN SWAQELCIFMF
Sbjct: 1   MKLLDHLEEWLIAFLMAAATFIIFVAVVHRYASGLDIPWLQDQLIQINMSWAQELCIFMF 60

Query: 62  VWMAKFGAAYGVRTGIHVGVDVLINRMNTPWRNKFVVLGLLAGALFTGIVGTLGAQFVWE 121
           VWMAKFGAAYGVRTGIHVGVDVLINR+NTPWRNKFV+ GL AGALFTGIVGT GA+FV++
Sbjct: 61  VWMAKFGAAYGVRTGIHVGVDVLINRLNTPWRNKFVLFGLFAGALFTGIVGTFGAEFVYD 120

Query: 122 ISQHSSTSEVLEIPMWMVYMAVPLGSYLMCFRFLQVCWAFIKTGELPKHDHAYVEGLDEE 181
           I+QH STSEV+E+PMW+VY+AVPLGSYLMCFRFLQV W F +TGELPKHDHA+VEGLDEE
Sbjct: 121 IAQHDSTSEVMEVPMWIVYLAVPLGSYLMCFRFLQVAWNFHRTGELPKHDHAHVEGLDEE 180

Query: 182 IAGGKA 187
            +GGKA
Sbjct: 181 TSGGKA 186


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.141    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 633,688
Number of extensions: 25717
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 2
Length of query: 187
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,241,070
Effective search space: 132794490
Effective search space used: 132794490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)