BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0002.p
         (93 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310178|ref|YP_003774270.1| TRAP-type C4-dicarboxylate tran...   139   5e-35
gi|300312105|ref|YP_003776197.1| TRAP-type C4-dicarboxylate-bind...   115   4e-28

>gi|300310178|ref|YP_003774270.1| TRAP-type C4-dicarboxylate
          transport system periplasmic protein [Herbaspirillum
          seropedicae SmR1]
          Length = 334

 Score =  139 bits (350), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 66/81 (81%), Positives = 73/81 (90%)

Query: 1  MKLKSLVFALAAATIIAGNAFAQAPIIIKFSHVVANDTPKGKGAERFKELAEKATKGRVK 60
          MKLKS++ A+ AA I++ NAFAQ PI+IKFSHVVANDTPKGK AERFKELAEKATKGRVK
Sbjct: 1  MKLKSILLAMTAAAIVSTNAFAQQPIVIKFSHVVANDTPKGKAAERFKELAEKATKGRVK 60

Query: 61 VEVYPNSTLYKDKEELEALXC 81
          +EVYPNSTLYKDKEELEAL  
Sbjct: 61 IEVYPNSTLYKDKEELEALQL 81


>gi|300312105|ref|YP_003776197.1| TRAP-type
          C4-dicarboxylate-binding periplasmic protein
          [Herbaspirillum seropedicae SmR1]
          Length = 344

 Score =  115 bits (289), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 55/57 (96%), Positives = 56/57 (98%)

Query: 23 QAPIIIKFSHVVANDTPKGKGAERFKELAEKATKGRVKVEVYPNSTLYKDKEELEAL 79
          Q PIIIKFSHVVANDTPKGKGAERFKELAEKAT+GRVKVEVYPNSTLYKDKEELEAL
Sbjct: 31 QQPIIIKFSHVVANDTPKGKGAERFKELAEKATQGRVKVEVYPNSTLYKDKEELEAL 87


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.130    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 201,063
Number of extensions: 5667
Number of successful extensions: 23
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 2
Length of query: 93
Length of database: 1,619,870
Length adjustment: 63
Effective length of query: 30
Effective length of database: 1,321,565
Effective search space: 39646950
Effective search space used: 39646950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)