BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0148.p
         (229 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311795|ref|YP_003775887.1| signal peptidase I (SPase I) fa...   166   2e-42
gi|300311259|ref|YP_003775351.1| signal peptidase I (SPase I) fa...    99   2e-22

>gi|300311795|ref|YP_003775887.1| signal peptidase I (SPase I)
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 231

 Score =  166 bits (420), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/185 (48%), Positives = 120/185 (64%), Gaps = 6/185 (3%)

Query: 6   AIKKLISANKGFLCFLLGMLLIRSAVADWYGVPSASMYPTLLIGDRIISNRLAYDVKLPF 65
            + KL++ NKG L F+  M++ RSA+AD+  VPS SM PT+ IGDRI+ +++AYD++LP 
Sbjct: 4   TLNKLLADNKGLLAFIALMVMFRSAIADYNVVPSGSMLPTVQIGDRILVDKMAYDLRLPL 63

Query: 66  TDIVVGRIADPQRGDIVTFSSPEDGTRLVKRLIGLPGDIVEMRDEQLVINGAPMTYDAAA 125
           T I + R+ +PQRGDIVT  S + G  LVKR++GLPGD+VE+RD  L ING P  Y  AA
Sbjct: 64  THISLLRLGEPQRGDIVTIDSRQAGELLVKRIVGLPGDVVELRDNVLFINGQPAHYHPAA 123

Query: 126 AAPASHRMPDYEGRQMIVR-ESLPAMAHGVMLLPERMALR-SFGPMIVPAGEYLVLGDNR 183
            AP +    D    Q   R E   AM H V L     +L  S+GP++VP G Y++LGDNR
Sbjct: 124 EAPEAGDGSD----QAAYRDERYGAMEHAVRLSAAHPSLHSSYGPVVVPPGHYMMLGDNR 179

Query: 184 DXLAD 188
           D   D
Sbjct: 180 DNSMD 184


>gi|300311259|ref|YP_003775351.1| signal peptidase I (SPase I)
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score = 99.4 bits (246), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 102/200 (51%), Gaps = 31/200 (15%)

Query: 11  ISANKGFLCFLLGMLLIRSAVADWYGVPSASMYPTLLIGDRIISNRLAYDVKLPFTDIVV 70
           I  +  F   +  +  +RS + + + +PS+SM PTLL+GD I+ N+  Y ++LP  +  +
Sbjct: 81  IEYSGSFFPVIALVFCLRSFLYEPFKIPSSSMVPTLLVGDLILVNKFTYGIRLPIINKKI 140

Query: 71  GRIADPQRGDIVTFSSPED-GTRLVKRLIGLPGDIVEMRDEQLVINGAPMTYDAAAAAPA 129
             +  PQRGD++ F  P+D     +KR++G+PGD +  ++++L +NG  ++Y A      
Sbjct: 141 IEVNQPQRGDVMVFKYPKDMSVDYIKRVVGVPGDKIVYKNKRLTVNGEQISYKA------ 194

Query: 130 SHRMPDYEGRQMIV-----RESLPAMAHGVM-------LLPE-----RMALRSFG----P 168
              +PDY   + +      +E+L  + H ++        +P         L ++      
Sbjct: 195 ---LPDYLDEENLTYYKQWQENLTGVEHKILTDERAPNFVPNPDAFPHHELCTYNAEGFA 251

Query: 169 MIVPAGEYLVLGDNRDXLAD 188
             VP GEY ++GDNRD   D
Sbjct: 252 CTVPPGEYFMMGDNRDNSLD 271


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 654,670
Number of extensions: 26878
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 2
Length of query: 229
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,231,600
Effective search space: 181045200
Effective search space used: 181045200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)