BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0146.p
         (139 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310752|ref|YP_003774844.1| glutamate-ammonia-ligase adenyl...   192   6e-51

>gi|300310752|ref|YP_003774844.1| glutamate-ammonia-ligase
           adenylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 927

 Score =  192 bits (489), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 98/139 (70%), Positives = 112/139 (80%), Gaps = 1/139 (0%)

Query: 1   LREDLLRQERDPQKLTQEVLGMRMKMHQAHPNPSTLFDLKHDDGGMIDIEFLVQFLVLRY 60
           LRE +LRQ RDP +L +EVL MR +M +AHPN ST+FDLKHD+GGMIDIEF+VQ+LVLR+
Sbjct: 789 LRERVLRQPRDPARLEEEVLSMRRRMREAHPNRSTMFDLKHDEGGMIDIEFMVQYLVLRH 848

Query: 61  ASQYQQLTGDIGNIALLKLCGSLGLIDAALADEVANAYRLFRKLQHQIRLRGEERX-TPI 119
           AS + QLTGDIGNIALLKL G LGLIDA LADE ANAYRLFRKLQHQIRL+G ER     
Sbjct: 849 ASDHPQLTGDIGNIALLKLAGQLGLIDALLADEAANAYRLFRKLQHQIRLQGSERAHIDA 908

Query: 120 ERVQKESDSVKRLWLEVFG 138
            RV+ E   V RLW +VFG
Sbjct: 909 IRVEHERACVIRLWQQVFG 927


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.140    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 424,828
Number of extensions: 15412
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 63
Effective length of database: 1,260,010
Effective search space: 79380630
Effective search space used: 79380630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)