BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0144.p
         (281 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310753|ref|YP_003774845.1| transmembrane protein [Herbaspi...   311   4e-86

>gi|300310753|ref|YP_003774845.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1439

 Score =  311 bits (796), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 146/252 (57%), Positives = 194/252 (76%), Gaps = 1/252 (0%)

Query: 1   MALKATPPADYAAPLDVRANFYHPSFASKISDVTRWKGTLYADVSNTDLAVWKAYVDYPL 60
           ++L+A PP  YAAPLDVRA+F HP+FA + SD+ RWKGTLYAD+  TDL+VW+AY DYP+
Sbjct: 220 LSLRAIPPTSYAAPLDVRADFSHPAFA-RSSDILRWKGTLYADLQRTDLSVWRAYFDYPI 278

Query: 61  ELNQGRGSVRAWLDLDHNKIANFTADLSLTNLSARLDKKLEPLQLARVSGRVSGSEIYAP 120
            +  G GSVRAWL LDH K+ANFTADL+L N +A+L ++LEPL L RV+GR+S SE    
Sbjct: 279 AIQSGTGSVRAWLALDHAKVANFTADLALNNFNAQLSRQLEPLSLKRVNGRISASESLGA 338

Query: 121 DLQDGIPTFGANGHKLTLSNFSLETDDGFALPPTTIFEVFEPATRFRPEKMTVEAQLLDL 180
             +DGIPTFGANGH++TL++FS+ET DGF LPPT+I E +EP T  + E+ +V+A  L+L
Sbjct: 339 TPEDGIPTFGANGHQVTLTDFSIETPDGFVLPPTSIAESYEPGTPLKAERTSVKATYLNL 398

Query: 181 AILSDLGSRLPLTPSQHKLLADLAPHGQLKDFSVQWEGSYPDVRAYRLRGAFSGLGMQPQ 240
             LS L +RLPL PSQ KLL DLAP G+L+DF+VQW+G+YP++ +YR++G FSGLG++  
Sbjct: 399 QTLSQLATRLPLAPSQRKLLDDLAPRGELRDFTVQWQGTYPELASYRVQGRFSGLGLKGL 458

Query: 241 AARLAQPKTATQ 252
            A +   + A Q
Sbjct: 459 PAHVEPRRNAAQ 470


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 966,439
Number of extensions: 41559
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,222,130
Effective search space: 240759610
Effective search space used: 240759610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)