BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0143.p
         (870 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310753|ref|YP_003774845.1| transmembrane protein [Herbaspi...  1020   0.0  

>gi|300310753|ref|YP_003774845.1| transmembrane protein
            [Herbaspirillum seropedicae SmR1]
          Length = 1439

 Score = 1020 bits (2638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/880 (56%), Positives = 650/880 (73%), Gaps = 20/880 (2%)

Query: 2    FADAAMPFDKLNLQSHWEIQKNEILQFHIDNLEFAQDSAAGTLSGTHTLPLQGKSPGVID 61
            F +++MPFD L +Q+ W+  K++ LQ  ++ L+FAQ   AG+LSG H  PLQGKS G +D
Sbjct: 514  FVESSMPFDSLKMQARWQYLKDQTLQVDLEQLQFAQPGVAGSLSGRHVQPLQGKSAGSVD 573

Query: 62   LKAKLSRFDLQKLSRYLPLHTAKPAMDWIS-----GAXR-ARARARGDLADFPFRNVKPG 115
            L  +LSRFD++ + RYLP H ++P   W++     G+ R  +   +G LADFPF   KPG
Sbjct: 574  LHGELSRFDVKAIRRYLPRHLSEPLRHWLTDGLVDGSLRDVQFTLKGALADFPFHTAKPG 633

Query: 116  SKNPGEFKVSGKFDKLKINYAPSHTGKDGKSPEWPLLEDVRGSITIDRTRLEIAADSGKT 175
             K  G+F++SG F+ LK+NY P H G+DGK PEWPLLE+ RG ++IDRTRLEI ADS +T
Sbjct: 634  DKPKGQFQLSGDFEGLKLNYTPGHLGRDGKEPEWPLLEEGRGHLSIDRTRLEIKADSART 693

Query: 176  HGVAVSDVKAVIPDLLNAESSLEIDGNAAGAMPDFLRYVKDSPVAHWIGNFTEDSQSTGN 235
             G  +  V A + D+ + E+ LEI+G A+  M  FLRYV  SPVA W GN  E S +TG 
Sbjct: 694  LGAKLGPVTARVADVDSHEAELEIEGVASAPMAVFLRYVNQSPVARWTGNLMEHSSATGE 753

Query: 236  AKLQLKFQLPLHHMIDAKVDGALQFLNNDVALLAGLPTIYRTNGKLEFNEKGFNLNGLKG 295
            A+L LKFQ+PLHH ID +  GA  F NNDV LL  LP +YRTNGK+EFNE GF LNG++G
Sbjct: 754  ARLDLKFQMPLHHAIDTRAQGAFHFANNDVDLLPDLPVLYRTNGKVEFNEHGFTLNGVRG 813

Query: 296  VFLNEPITAAGGTQRDGTTLVKVDGAITADGLRKAYSEPVLQRLLGRLNGASRYTATIAV 355
             FL + +T +GGTQ+DG++ ++++GAI  D LRK Y EP LQRLL RL+G +RY AT+ V
Sbjct: 814  QFLGDALTISGGTQKDGSSQMRLEGAINVDMLRKQYPEPSLQRLLARLSGTTRYNATVLV 873

Query: 356  RQHLPEITIESSLQGMAVDLPAPMQKAAGESWPLKFEIIGMPSVDPLLQRDEIKLSLSSV 415
            RQH PE+ +ESSL G+ VDLP P++K+A ES PL+FE++ + S DPL++R+E+KL+L S 
Sbjct: 874  RQHQPEVVVESSLAGLGVDLPVPLRKSAQESLPLRFELLPLASADPLIEREELKLALGSS 933

Query: 416  LAARYQRQKVLGK-ADWQVLSGGIGFGQAAPQPDSGLAIYASAKSINIDQWVSFRAAMLK 474
            +A+RY R++V    A W+V SGGIG+ Q AP P +GL +  +A S+ +D W+S +  ++ 
Sbjct: 934  IASRYVRERVAATGAAWRVTSGGIGWNQPAPSPSAGLKLALAADSLEVDPWLSLKNELVG 993

Query: 475  QA---DGSEGAPDPG---LSAYLEPDVIAGRTSELLLMGKKLDNVVLGASHQNKAWQVNI 528
             A   D S  +   G   ++ YL PD ++ R  EL L GKKL+ ++L A+H+  +WQ+++
Sbjct: 994  PAVAEDASAASTRLGSGDIAQYLAPDQVSARVGELSLKGKKLNKLILEAAHRRNSWQISL 1053

Query: 529  SSDQATGYATWSESGSGRGLGRVTARLATLNIQKGAGTDPADLLENNADAADNTNANSAS 588
             S Q  G  TW ESG+ RG G+VTARL++L I K   T      EN A  A   + +   
Sbjct: 1054 ESQQVAGTVTWDESGAARGPGKVTARLSSLVIPKSTPT-----AENGA--ATVASEDDKV 1106

Query: 589  RIPALDIVAEDFRLFGKKLGRLELNAHNVRVSVGNEWRINKLTLINPDAELRAAGNWMAF 648
            ++PALDI AE F L GKKLGRLEL+A N+  SVG EWRI++L L NPDA+ RAAGNWM+F
Sbjct: 1107 QMPALDIRAEQFELGGKKLGRLELDASNMVTSVGREWRISRLLLANPDAQFRAAGNWMSF 1166

Query: 649  GRNNTSNLTYALDINDAGKLLERFGFAGVVRGGKGQLDGDVSWKGLPYSLDIPSLSGQLH 708
            G N+TSN TYALDI DAGKLLERFG+ G VRGGKG+LDGD+SWK  PY++D+ SL+GQ+H
Sbjct: 1167 GSNHTSNFTYALDIEDAGKLLERFGYPGTVRGGKGKLDGDLSWKAPPYAMDMASLAGQVH 1226

Query: 709  MDMHSGQFLKVDPGAAKLLGVLNLQALPRRLALDFRDVFSEGFAFDNIVGTASIAQGIAT 768
            MD+H+GQFLKVDPGAAKLLGVLNLQALPRRL LDFRDVFSEGFAFD + GTASI +GIA+
Sbjct: 1227 MDVHAGQFLKVDPGAAKLLGVLNLQALPRRLTLDFRDVFSEGFAFDTVAGTASINKGIAS 1286

Query: 769  TDNLKMTGVAASVLMNGSADIAKETQNLHLVVIPEVNLGTASLVALAINPVVGVGTYLAQ 828
            TDNLKMTGV ASVLM+GSADIA+ETQ+LH+VVIPE+NLGTAS+VA+A+NPVVGV T LAQ
Sbjct: 1287 TDNLKMTGVTASVLMSGSADIARETQDLHVVVIPEINLGTASVVAMAVNPVVGVSTLLAQ 1346

Query: 829  LFLRNPLMKTLTFEYNVTGSWSDPLVVKQERSADVNSKPA 868
            LFLRNP+MK+L+FEY V+GSWSDP+VVKQ +   V+ + A
Sbjct: 1347 LFLRNPVMKSLSFEYKVSGSWSDPIVVKQGQVTPVDGQRA 1386


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,826,236
Number of extensions: 125328
Number of successful extensions: 346
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 1
Length of query: 870
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 776
Effective length of database: 1,174,780
Effective search space: 911629280
Effective search space used: 911629280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 135 (56.6 bits)