BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0139.p
         (374 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310756|ref|YP_003774848.1| 3-deoxy-D-arabino-heptulosonate...   684   0.0  

>gi|300310756|ref|YP_003774848.1| 3-deoxy-D-arabino-heptulosonate
           7-phosphate synthase [Herbaspirillum seropedicae SmR1]
          Length = 357

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/353 (93%), Positives = 340/353 (96%)

Query: 21  MPRTDDLRIREMKELTPPSHLIREFGGSEKVESTTAECRTALHRILHGQDDRVMVVIGPC 80
           MPRTDDLRIREMKEL PPSHLIREF  +EKVE TTAE RTALHRILHGQDDR+MVVIGPC
Sbjct: 1   MPRTDDLRIREMKELVPPSHLIREFACTEKVERTTAEARTALHRILHGQDDRLMVVIGPC 60

Query: 81  SIHDTKAAMEYARRLVVERERFKGELEIVMRVYFEKPRTTVGWKGLINDPYMDNSFRIND 140
           SIHDTKAAMEYARRLVVERER K ELEIVMRVYFEKPRTTVGWKGLINDPYMDNSFRIND
Sbjct: 61  SIHDTKAAMEYARRLVVERERHKNELEIVMRVYFEKPRTTVGWKGLINDPYMDNSFRIND 120

Query: 141 GLRTARELLLNINELGLPAGTEFLDVISPQYIADLISWGAIGARTTESQVHRELASGLSC 200
           GLR ARELLLNINELGLPAGTEFLDVISPQYIADLISWGAIGARTTESQVHRELASGLSC
Sbjct: 121 GLRAARELLLNINELGLPAGTEFLDVISPQYIADLISWGAIGARTTESQVHRELASGLSC 180

Query: 201 PVGFKNGTDGNIKIAVDAIKAASQPHHFLSVTKGGHSAIVSTAGNEDCHIILRGGKTPNY 260
           PVGFKNGTDGN+KIAVDAIKAASQPHHFLSVTKGGHSAIVSTAGNEDCHIILRGGK PNY
Sbjct: 181 PVGFKNGTDGNVKIAVDAIKAASQPHHFLSVTKGGHSAIVSTAGNEDCHIILRGGKQPNY 240

Query: 261 DAASVEAACQDIAKSGLAARLMIDASHANSSKKPENQIPVCADIAGQIAGGDSRIVGVMV 320
           DA SVEAACQDIAKSGLAARLMIDASHANSSKKPENQIPVCADI  QIAGGD+RIVGVMV
Sbjct: 241 DAPSVEAACQDIAKSGLAARLMIDASHANSSKKPENQIPVCADIGRQIAGGDTRIVGVMV 300

Query: 321 ESNLVAGRQDLVPGKELTYGQSVTDGCIDWEESLGVLQGLADAVRQRRLIGDK 373
           ES+LVAGRQDLVPGKELTYGQS+TDGCI+WEESL VLQGLAD+V+QRRL+GD+
Sbjct: 301 ESHLVAGRQDLVPGKELTYGQSITDGCINWEESLQVLQGLADSVKQRRLVGDE 353


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,168,553
Number of extensions: 48225
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 287
Effective length of database: 1,207,925
Effective search space: 346674475
Effective search space used: 346674475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)