BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0135.p
         (341 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310758|ref|YP_003774850.1| UDP-N-acetylenolpyruvoylglucosa...   499   e-142

>gi|300310758|ref|YP_003774850.1|
           UDP-N-acetylenolpyruvoylglucosamine reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score =  499 bits (1285), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 246/338 (72%), Positives = 277/338 (81%)

Query: 4   IPVQRDFSLRHLNTFGIDAKAAVYLPVDDVDTLLAVKNDKELSMLPRLVLGGGSNLLLTQ 63
           +P+Q   SL  LNTFG+ A+A  YLPV   DTL A++ D  L  LPRLVLGGGSNLLLTQ
Sbjct: 6   LPLQYAVSLAGLNTFGLQAQAYAYLPVQGADTLHALRQDAALMALPRLVLGGGSNLLLTQ 65

Query: 64  DFAGLVLHMRGAGMRIVNEDEDFVYVTAAAGENWHRFVQWSLDLGLGGLENLSLIPGSVG 123
           DF GLVLHM+G GM I  EDEDF+YV AAAGENWH FVQW+L  GLGGLENLSLIPGSVG
Sbjct: 66  DFPGLVLHMQGRGMTITGEDEDFIYVCAAAGENWHGFVQWTLAQGLGGLENLSLIPGSVG 125

Query: 124 AAPIQNIGAYGVEVKDRFHSLTAFDFIDGKTFTLGNAACRFAYRDSIFKQELRDRAVVLD 183
           AAPIQNIGAYG+EVKDRFHSL AFD   G+  TL   ACRF YRDS+FK  LRDRAVVL+
Sbjct: 126 AAPIQNIGAYGIEVKDRFHSLRAFDLATGEILTLDRDACRFGYRDSVFKHALRDRAVVLE 185

Query: 184 VTFALPKQWQANMNYADVMQELSPRQITVPSPRDIAGAVIAIRTRKLPDPAQIGNAGSFF 243
           V+FALPK+WQAN NYADV Q L  R +T P P DIA AVIAIRTRKLPDPAQIGNAGSFF
Sbjct: 186 VSFALPKRWQANANYADVAQALQERGVTEPGPGDIAEAVIAIRTRKLPDPAQIGNAGSFF 245

Query: 244 KNPIVPAQQRESLLAQHPQLVSYAQPDGGYKLAAGWLIDQCGWKGRSLGAAGVYEKQALV 303
           KNPIVPA+ R++LLAQ+  LVSY   +G YKLAAGWLID+ GWKG+++G AGVYEKQALV
Sbjct: 246 KNPIVPARLRDTLLAQYADLVSYRVDEGHYKLAAGWLIDRSGWKGKTVGRAGVYEKQALV 305

Query: 304 LVNKGGASGREIAALAQAIQADVQAKFGVKLEPEPVFI 341
           LVN+GGA+G E+A LA+AIQ DV+ KFGV+LEPEPVFI
Sbjct: 306 LVNRGGATGAEVARLAKAIQEDVKEKFGVQLEPEPVFI 343


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,166,251
Number of extensions: 52682
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 255
Effective length of database: 1,212,660
Effective search space: 309228300
Effective search space used: 309228300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)