BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0133.p
         (446 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310760|ref|YP_003774852.1| argininosuccinate synthase [Her...   862   0.0  

>gi|300310760|ref|YP_003774852.1| argininosuccinate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 444

 Score =  862 bits (2228), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/443 (93%), Positives = 431/443 (97%)

Query: 1   MSNILQSVPVNEKVGIAFSGGLDTSAALTWMRQKGAVPYAYTANLGQPDEPDYDAIPKKA 60
           MSNILQSVPVN+KVGIAFSGGLDTSAALTWMRQKGA+PYAYTANLGQPDEPDYDAIPKKA
Sbjct: 1   MSNILQSVPVNQKVGIAFSGGLDTSAALTWMRQKGAIPYAYTANLGQPDEPDYDAIPKKA 60

Query: 61  LQYGAELARLIDCREQLANEGIAALQSGAFHISTAGVTYFNTTPLGRAVTGTMLVAAMRE 120
           +QYGA+ ARLIDCREQLANEGIAALQSGAFHISTAG+TYFNTTPLGRAVTGTMLV+AMRE
Sbjct: 61  MQYGAQQARLIDCREQLANEGIAALQSGAFHISTAGITYFNTTPLGRAVTGTMLVSAMRE 120

Query: 121 DNVDIWGDGSTFKGNDIERFYRYGLLVNPNLRIYKPWLDNTFIDELGGRKEMSEFMIKSG 180
           DNVDIWGDGST+KGNDIERFYRYGLLVNPNL+IYKPWLD+TFIDELGGRKEMSEFMIKSG
Sbjct: 121 DNVDIWGDGSTYKGNDIERFYRYGLLVNPNLKIYKPWLDSTFIDELGGRKEMSEFMIKSG 180

Query: 181 FDYKMSVEKAYSTDSNMLGATHEAKDLEFLNSGIKIVQPIMGVAFWRDDVAVKAEEVTVR 240
           FDYKMSVEKAYSTDSNMLGATHEAKDLEFLNSGIKIVQPIMGVAFWRDDV VKAE VTVR
Sbjct: 181 FDYKMSVEKAYSTDSNMLGATHEAKDLEFLNSGIKIVQPIMGVAFWRDDVEVKAETVTVR 240

Query: 241 FEEGRPVALNGKTFDNMTDLILEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGLALL 300
           FEEGRPVALNGKTF +MT+LILEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGLALL
Sbjct: 241 FEEGRPVALNGKTFASMTELILEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGLALL 300

Query: 301 FIAYERLITGIHNEDTIEQYRDNGRKLGRLLYQGRWFDSQAIMLRETAQRWVARAITGEV 360
           FIAYERL+TGIHNEDTIEQYRDNGRKLGRLLYQGRWFDSQAIMLRETAQRWVARAITGEV
Sbjct: 301 FIAYERLVTGIHNEDTIEQYRDNGRKLGRLLYQGRWFDSQAIMLRETAQRWVARAITGEV 360

Query: 361 TVELRRGNDYSILNTESANLTYQPERLTMEKGEGAFTPQDRIGQLTMRNLDIIDTRQKLA 420
           TVELRRGNDYSILNTES NLTY PERLTMEKGEG+F+  DRIGQLTMRNLDI DTRQKLA
Sbjct: 361 TVELRRGNDYSILNTESPNLTYHPERLTMEKGEGSFSAIDRIGQLTMRNLDIADTRQKLA 420

Query: 421 IYQSTGLLATSNAVSLPLLEKDK 443
           IYQ+TGLL +S AVSLPLL KD+
Sbjct: 421 IYQNTGLLESSTAVSLPLLGKDE 443


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,388,110
Number of extensions: 59742
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 358
Effective length of database: 1,203,190
Effective search space: 430742020
Effective search space used: 430742020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)