BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0131.p
         (304 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310761|ref|YP_003774853.1| ornithine carbamoyltransferase ...   585   e-168
gi|300309808|ref|YP_003773900.1| aspartate carbamoyltransferase ...    77   1e-15

>gi|300310761|ref|YP_003774853.1| ornithine carbamoyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  585 bits (1509), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 275/302 (91%), Positives = 290/302 (96%)

Query: 1   MAIKHYLQFSDFTLDEYEYVIERSRVIKRKFKNYEPHHSLADRTLVMVFEKNSTRTRLSF 60
           MAIKHYLQFSDFTLDEYEYVIERSRVIKRKFKNYEPHH+LADRTLVMVFEKNSTRTRLSF
Sbjct: 1   MAIKHYLQFSDFTLDEYEYVIERSRVIKRKFKNYEPHHTLADRTLVMVFEKNSTRTRLSF 60

Query: 61  EAGMHQLGGAAIYLNTRDSQLGRGEPIEDAAQVMSRMCDVIMIRTFGQEIIDRFAAYSRV 120
           EAGMHQ+GGAAIYLNTRDSQLGRGEP+EDAAQVMSRMCDVIMIRT+GQEII+RFA +SRV
Sbjct: 61  EAGMHQMGGAAIYLNTRDSQLGRGEPVEDAAQVMSRMCDVIMIRTYGQEIIERFAKHSRV 120

Query: 121 PVINGLTNEHHPCQVLADVFTYIEQRGSIRDKVVAWIGDANNMLYSWLQAAEVFGFHVNV 180
           PVINGLTNE HPCQVLADVFTYIE  GSI+ K+VAW+GDANNMLYSWLQAAEVFGFHVNV
Sbjct: 121 PVINGLTNEQHPCQVLADVFTYIEHHGSIQGKIVAWVGDANNMLYSWLQAAEVFGFHVNV 180

Query: 181 STPKGYDIDQKLVSPGHQRYTFFANPADACQDADLVTTDVWTSMGYEDENAARLKAFDGW 240
           STPKGYDID   VSPG++ YTFFA+PADACQDADLVTTDVWTSMG+E EN ARLKAFDGW
Sbjct: 181 STPKGYDIDPAQVSPGNKNYTFFADPADACQDADLVTTDVWTSMGFEAENNARLKAFDGW 240

Query: 241 IVDQAKMARARKDALFMHCLPAHRGEEVAAEVIDGPQSVVWEEAENRLHVQKALLEYLVL 300
           IVDQAKMARA+KDALFMHCLPAHRGEEVAAEVIDGPQSVVWEEAENRLHVQKALLEYLV 
Sbjct: 241 IVDQAKMARAKKDALFMHCLPAHRGEEVAAEVIDGPQSVVWEEAENRLHVQKALLEYLVH 300

Query: 301 GK 302
           G+
Sbjct: 301 GR 302


>gi|300309808|ref|YP_003773900.1| aspartate carbamoyltransferase
           catalytic subunit [Herbaspirillum seropedicae SmR1]
          Length = 319

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 125/273 (45%), Gaps = 26/273 (9%)

Query: 43  RTLVMVFEKNSTRTRLSFEAGMHQLGGAAIYLNTRDSQLGRGEPIEDAAQVMSRM-CDVI 101
           +++  +F +NSTRTR +FE    +L    I LN + S   +GE + D    ++ M  D+ 
Sbjct: 53  KSVFNLFFENSTRTRTTFEIASKRLSADVINLNIQASSTSKGESLLDTIDNLAAMHADMF 112

Query: 102 MIR--------TFGQEIIDRFAAYSRVPVINGLTNEH-HPCQVLADVFTYIEQRGSIRDK 152
           ++R           + +ID     S V V+N     H HP Q L D++T    +    + 
Sbjct: 113 VVRHAQSGAPFLIAKHLID--TKQSHVHVVNAGDGRHAHPTQGLLDMYTIRHYKKDFTNL 170

Query: 153 VVAWIGDANNMLYSWLQAAEVFGFHVNVSTPKGYDIDQKLVSPG---HQRYTFFANPADA 209
            VA +GD   +L+S +  +++      +  P+   I  + + P          F N  + 
Sbjct: 171 RVAIVGD---ILHSRVARSDIHAL-TTLGVPEVRAIGPRTLLPSGLEQMGVRVFHNMEEG 226

Query: 210 CQDADLVTTDVWTSMGYEDENAARLKA----FDGWIVDQAKMARARKDALFMHCLPAHRG 265
            +D D++   +   +  E  + A L +    F  + +   ++A A+ DA+ MH  P +RG
Sbjct: 227 LKDVDVI---IMLRLQNERMSGALLPSAQEFFKSYGLTPERLALAKPDAIVMHPGPMNRG 283

Query: 266 EEVAAEVIDGPQSVVWEEAENRLHVQKALLEYL 298
            E+ + V DG Q+V+  +    + V+ A++  +
Sbjct: 284 VEIDSAVADGAQAVILPQVTFGIAVRMAVMSIV 316


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 930,854
Number of extensions: 37024
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,217,395
Effective search space: 266609505
Effective search space used: 266609505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)