BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0130.p (518 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310762|ref|YP_003774854.1| outer membrane ferric sideropho... 392 e-110 gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore... 184 2e-47 gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore rece... 132 6e-32 gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein... 122 9e-29 gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore rece... 120 4e-28 >gi|300310762|ref|YP_003774854.1| outer membrane ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 717 Score = 392 bits (1007), Expect = e-110, Method: Compositional matrix adjust. Identities = 221/411 (53%), Positives = 275/411 (66%), Gaps = 25/411 (6%) Query: 13 ARLRPLAITICSIASSFDYAYAAD---GSERE---AVDLPAIEIRSKRSHYDPRPASVNT 66 A +R L T+C +A AYAA+ G+E E LP +E+R +R DPR V T Sbjct: 11 ACVRRLPATLC-LAFLALPAYAAERDGGNEGEPSGESSLPVVEVRDQRRSPDPRARRVGT 69 Query: 67 ATRTDTDLRDVPQTVNSIRVEDVASYGGQTLADALSGVPGISNTSDTRFDSFRIRGFAGA 126 ATR+ D +VPQ++ S+ VE V+ YG +TLA AL GVPGIS+ SDTRFD+FRIRGF+ A Sbjct: 70 ATRSAADPMEVPQSIQSVSVEQVSVYGARTLAGALLGVPGISSISDTRFDAFRIRGFSSA 129 Query: 127 GDVFLDGVRDDAQYVRSLGNIERVEVLKGPAAVLYGRGSGGGVINRISKQPGHDVQSSVR 186 D+ LDG+RDD QYVR LGNIERVEVL+GPA+VLYGRGSGGGVINRISKQPG DV S Sbjct: 130 NDLLLDGMRDDPQYVRGLGNIERVEVLRGPASVLYGRGSGGGVINRISKQPGQDVASQAT 189 Query: 187 LNTGSYGRIGAAADVNQVLSEEWAMRINAGRDHAGSFRNGVDTTRQYLAPSIKWDNQRTS 246 L+ GS G +GAA D N+ L+ WA+RIN GR+HAGSFR+ V+ TRQY AP++KW++ R S Sbjct: 190 LSLGSAGLLGAALDWNRPLAPHWALRINTGREHAGSFRDTVNGTRQYFAPALKWESGRDS 249 Query: 247 WLLQLEQSEFERVPDRGMP--AGRRANG---TYFLPPAPQSTTYGALGRDFIKDTSTYVR 301 WLLQ E E+ERVPDRG+P A ANG Y LP A +GA GRD I+D +R Sbjct: 250 WLLQAEYDEYERVPDRGIPGRAIATANGEPTAYALPSAGHEQFFGAAGRDVIRDIHMSLR 309 Query: 302 STFEHKLEAQWKIRNVLSLLNLDSRFDNTFAGGLTGAGNSG------VTRSRWQQDLQHR 355 ST L W +R+ L+L++L+S FDNTF +T A S V R+R+QQ+LQ R Sbjct: 310 STLTRALSQDWTLRHALALMDLNSNFDNTF---VTQAYQSAPLDLDRVQRTRYQQNLQQR 366 Query: 356 NWQSNLELEGKLDAGSMQHQLLLGAEYSNENRHPRLWRANASTVSLTAPGN 406 + Q+NLEL G+L A H LLLG E+S + R PRLW A VS P N Sbjct: 367 SVQNNLELLGQLGA----HDLLLGVEHSWQKREPRLWSVAAPAVSAVTPEN 413 >gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 704 Score = 184 bits (466), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/381 (33%), Positives = 190/381 (49%), Gaps = 16/381 (4%) Query: 14 RLRPLAITICSIASSFDYAYAADGSEREAVDLPAIEIRSKRSHYDPRPASVNTATRTDTD 73 RL PL + + + S A ++++ LPAIE+ R++ + + T+++ Sbjct: 4 RLSPLRLAVLATCSLSPLAILPACAQQDTTALPAIEVSGARANDGYVAPTAVSGTKSEAP 63 Query: 74 LRDVPQTVNSIRVEDVASYGGQTLADALSGVPGIS-NTSDTRFDSFRIRGFAGAGDVFLD 132 LRDVPQT+N + + + +L D L VPG+ +T D + D IRGF GD F+D Sbjct: 64 LRDVPQTINVVPAQVIRDQNASSLQDVLKNVPGLGLSTGDGQRDQVFIRGFTAIGDQFVD 123 Query: 133 GVRDDAQYVRSLGNIERVEVLKGPAAVLYGRGSGGGVINRISKQPGHDVQSSVRLNTGSY 192 G RDDA Y R L N+E VEV+KGPAAVLYGRGS GG+INR++K+PG DV S V S Sbjct: 124 GFRDDALYFRDLSNVESVEVIKGPAAVLYGRGSSGGLINRVTKKPGVDV-SDVSFTANST 182 Query: 193 GRIGAAADVNQVLSEEWAMRINAGRDHAGSFRNGVDTTRQYLAPSIKWD-NQRTSWLLQL 251 A D+ + + R+ + SFR R +APS+ + T LLQ+ Sbjct: 183 AGRRAELDLGRAGEGALSWRLTGAVERGDSFRAQQFIDRTAIAPSVALRFSADTKLLLQM 242 Query: 252 EQSEFERVPDRGMPA--GRRANGTYFLPPAPQSTTYGALG---RDFIKDTSTYVRSTFEH 306 + E R+ D G+P+ GR + TTYGA DF++ +TF H Sbjct: 243 DYLEDRRMMDFGIPSYRGRPVD-------VDPGTTYGARNARDADFVQSRVASTTATFTH 295 Query: 307 KLEAQWKIRNVLSLLNLDSRFDNTFAGGLTGAGNSGVTRSRWQQDLQHRNWQSNLELEGK 366 + ++ RN L + +NT GG + T + + W + EL K Sbjct: 296 RFNDEFSFRNGLRYYDYHLNRNNT-NGGTVNEATATTTLNHAKLVRDENGWFNQSELTQK 354 Query: 367 LDAGSMQHQLLLGAEYSNENR 387 L GS++H++L G E ++++ Sbjct: 355 LQLGSIRHEILYGLELGSQSK 375 >gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 132 bits (333), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 114/399 (28%), Positives = 187/399 (46%), Gaps = 23/399 (5%) Query: 15 LRPLAITICSIASSFDYAYAADGSEREAVDLPAIEIRSKRSHYDPRPASVNTATRTDTDL 74 LR + ++ + ++AAD + ++ DL I + + R +S ++ATRT+T L Sbjct: 6 LRAAVLGALALGQTPSVSWAADAAGKQEGDLGEIVVTGQGERQQYRQSSTSSATRTETPL 65 Query: 75 RDVPQTVNSIRVEDVASYGGQTLADALSGVPGIS--NTSDTRFDSFRIRGFAGAGD---- 128 +++PQ+V + + + L D L V G++ N +D++ IRGF+G+ + Sbjct: 66 QELPQSVQVVSRQLIDDLAATRLDDVLLYVSGVARQNNFGGLWDNYSIRGFSGSENGGMN 125 Query: 129 VFLDGVRDDAQYV--RSLGNIERVEVLKGPAAVLYGRGSGGGVINRISKQPGHDVQSSVR 186 + +G + Y R + N+E V+ LKGPAA LYG GG IN ++K+P +++ Sbjct: 126 ILWNGFASNRGYAPPRDMANVESVDFLKGPAAALYGNSEPGGTINVVTKKPQFKSANALD 185 Query: 187 LNTGSYGRIGAAADVNQVLSEEWAMRINAGRDHAGSFRNGVDTTRQYLAPSIKWDNQRTS 246 L+ GS +A D LS A R+NA +H GS R+ V + R++ AP+ W + Sbjct: 186 LSIGSNDAYRSAVDSTGALSSTVAYRLNAAMEHKGSMRDQVRSEREFFAPAFTWLLTENT 245 Query: 247 WLLQLEQSEF--ERVP-DRGMPAGRRANGTYFLPPAPQSTTYGALGRDFIKDTSTYVRST 303 +L E EF ++ P DRG+ A NG + P S G IK + T Sbjct: 246 -ILNYE-GEFLRQKAPLDRGIVA---VNGNAGVLPV--SRFLGEPNDGDIKMQNQNHLLT 298 Query: 304 FEHKLEAQWKIRNVL--SLLNLDSRFDNTFAGGLTGAGNSGVTRSRWQQDLQHRNWQSNL 361 E +L W +R + +LD FA A N+ + R R +D + Sbjct: 299 LEQRLNENWHLRTGIFHKEGSLDGYSTEAFA---LQADNATLRRQRRYRDYSWHDTSLQA 355 Query: 362 ELEGKLDAGSMQHQLLLGAEYSNENRHPRLWRANASTVS 400 E+ GK + H++L+G E R+ R N S V+ Sbjct: 356 EIGGKFATAGVGHEVLVGTEVDWLTLDQRMLRINPSNVA 394 >gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 122 bits (305), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 113/384 (29%), Positives = 178/384 (46%), Gaps = 37/384 (9%) Query: 45 LPAIEIRSK--------RSHYDPRPASVNTATRTDTDLRDVPQTVNSIRVEDVASYGGQT 96 LP +EI++ + R AS AT+TDT + +VPQ+V+ + +++ + G + Sbjct: 31 LPQVEIKADAETANGPVNGYVAKRTAS---ATKTDTPVLEVPQSVSVVTRDEMDARGVTS 87 Query: 97 LADALSGVPGISNTS---DTR-FDSFRIRGFAGAGDV--FLDGVRDD----AQYVRSLGN 146 L D L +PG ++ + D R ++ F +RGF A FL+G+R Q+ Sbjct: 88 LLDVLRYMPGANSETHGVDPRGYEYFNLRGFINAQVTSNFLNGLRQIPGGFGQFRTETYG 147 Query: 147 IERVEVLKGPAAVLYGRGSGGGVINRISKQPGHDVQSSVRLNTGSYGRIGAAADVN-QVL 205 +ER+EVL+GP +V +G+ GGVINR+SK PG D+ + + ++ GS+ R AD+N Sbjct: 148 MERIEVLRGPGSVTFGQADPGGVINRVSKLPGMDIPNELGVDIGSFNRKQVVADLNGHTQ 207 Query: 206 SEEWAMR-INAGRD--HAGSFRNGV--DTTRQYLAPSIKWDNQRTSWLLQLEQSEFERVP 260 E+ R + G D + F NG D R YLAPS+ W ++ L + +R Sbjct: 208 DGEYLWRVVGLGLDSNNQYKFNNGQSGDNNRFYLAPSLTWRPSASTSLTLMADYMNDRSG 267 Query: 261 DRGMPAGRRANGTYFLPPAPQSTTYGALGRDFIKDTSTYVRSTFEHKLEAQWKIRNVLSL 320 A R N T G D + FEHK + W R Sbjct: 268 SSRWTAVRPGN-------VLTHTLIGDPNFDRQSNDQWSFGYQFEHKFDNAWTFRQNFRQ 320 Query: 321 LNLDSRFDNTFAGGLTGAGNSGVTRSRWQQDLQHRNWQSNLELEGKLDAGSMQHQLLLGA 380 NL S + G LTG S +TR + Q N + +LEG+L G+ +H +L G Sbjct: 321 ANLKSVYAALNPGTLTG---SVLTRGTTVYNSQVDNTLVDNQLEGRLKWGATEHTVLFGL 377 Query: 381 EYSNENRHPRLWRANASTVSLTAP 404 ++S +R A ++++ P Sbjct: 378 DWSRMYDREVRYRGAAPSLNIDNP 401 >gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 738 Score = 120 bits (300), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 118/393 (30%), Positives = 180/393 (45%), Gaps = 64/393 (16%) Query: 34 AADGSEREAVDLPAIEIRSKRSHYDPRPASVNTA-TRTDTDLRDVPQTVNSIRVEDVASY 92 AADG L + ++ +R + AS TA T+ DLRDVPQ+V + + S Sbjct: 37 AADGQ------LAPVTVQGQRDDF----ASTGTALTKLPADLRDVPQSVTVVNKAQMQSQ 86 Query: 93 GGQTLADALSGVPGIS---NTSDTRFDSFRIRGFAGAGDVFLDGVRDDAQYVRSLGNIER 149 G +L+DAL V GI+ ++ + GF+ D++LDG RD QY R I+ Sbjct: 87 GASSLSDALRNVSGITLGGAEGGQIGNNINLNGFSARTDIYLDGFRDRGQYYRDTFAIDE 146 Query: 150 VEVLKGPAAVLYGRGSGGGVINRISKQPGHDVQSSVRLNTGSYGRIGAAADVNQVLSEEW 209 VEVL GP+++L+GRGS GG+IN++SK+ + + + + G + + DVN+ LS+ Sbjct: 147 VEVLMGPSSMLFGRGSTGGIINQVSKKANLKAATEISGSITTNGLVRSTVDVNRPLSDTS 206 Query: 210 AMRINA-GRDHAGSFRNGVDTTRQYLAPSIKW-----DNQRTSWLLQLEQSEFERVPDRG 263 A+RI A ++ A S R D LA S W S LLQ Q + PD G Sbjct: 207 ALRIEAMAQNGAASTRKQTDVQDFGLAGSYVWGIGTPTEITLSALLQHNQDQ----PDYG 262 Query: 264 MPA--GRRANGTYFLPPAPQSTTYGALGRDFIKDTSTYVRSTFEHKLEAQWKIRN--VLS 319 +P G AN + T YG I+D +++ +HK+ +RN + Sbjct: 263 LPPLNGHPAN-------VGRDTAYGLNSDRTIQDVASF-NVGVKHKIAPDVTLRNQTQFN 314 Query: 320 LLNLDS--RFDNTFAGGLTGAGNS-----------------GVTRSRWQQDLQHRNWQSN 360 ++ D+ NT G ++GAG + G + R D N Sbjct: 315 YVHTDAVETAPNTI-GTVSGAGFTQLVNASSNLPLSSLFVRGQSHDRVITDYSIFN---Q 370 Query: 361 LELEGKLDAGSMQHQLLLGAE-----YSNENRH 388 EL K GS++H ++G E Y N+N + Sbjct: 371 TELTAKFATGSIKHDAVVGVEVGHDGYDNQNYY 403 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.131 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,683,797 Number of extensions: 72230 Number of successful extensions: 227 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 192 Number of HSP's successfully gapped: 17 Length of query: 518 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 429 Effective length of database: 1,198,455 Effective search space: 514137195 Effective search space used: 514137195 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)