BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0129.p (153 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310762|ref|YP_003774854.1| outer membrane ferric sideropho... 185 1e-48 gi|300311911|ref|YP_003776003.1| TonB-dependent siderophore rece... 65 2e-12 gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore... 63 1e-11 gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore rece... 60 8e-11 gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore rece... 56 1e-09 >gi|300310762|ref|YP_003774854.1| outer membrane ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 717 Score = 185 bits (469), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 89/151 (58%), Positives = 115/151 (76%), Gaps = 6/151 (3%) Query: 3 TGLERNRGIELSVNGQLATDWFIRSGFSVQNARIVEAKSCAACGASVQGKRSAGVSSANG 62 +GLERNRGIELSV G+LA WF+R+G+++Q+A+IV+A+ GKR++GVS G Sbjct: 573 SGLERNRGIELSVEGELAAPWFVRAGWAIQSAKIVQAEP------KFVGKRASGVSGRGG 626 Query: 63 SVFVGYAPVQGFFAEAGVIYEGSRYVDVANRLDLPAYTRWDAKAGYRFPKVELTLAVTNL 122 S+F+ YAP G+FAE G+ EG+RY D N L+LPAYTRWD K GYR + E TLAVTNL Sbjct: 627 SLFLSYAPTLGWFAELGLTVEGARYADRDNLLELPAYTRWDGKMGYRLDEAEFTLAVTNL 686 Query: 123 SNRSYYPTSTGLSQIMPGAPRSALLSAAYKF 153 +NR YY ++TGLSQ+ PGAPR+ LL+AAYKF Sbjct: 687 ANRRYYESATGLSQVRPGAPRALLLTAAYKF 717 >gi|300311911|ref|YP_003776003.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 733 Score = 65.5 bits (158), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 14/159 (8%) Query: 4 GLERNRGIELSVNGQLATDWFIRSGFSVQNARIVEAKSCAACGASVQGKRSAGVS--SAN 61 G +RNRG+EL+ G++ + SG + +A+ V+ S A GK + GV AN Sbjct: 580 GKQRNRGVELTAYGEVTKGVRLLSGLTFLDAKQVQTNSSAN-----NGKYAIGVPRVQAN 634 Query: 62 GSVFVGYAPVQGFFAEAGVIYEGSRYVDVANRLDLPAYTRWDAKAGYRFP----KVELTL 117 + V V+G Y ++YVD AN+L++P++ R+D A Y V L Sbjct: 635 AGLEVDVPGVRGLTLNGRATYTSTQYVDAANQLEVPSWVRYDLGARYLTDIGGHAVTLRA 694 Query: 118 AVTNLSNRSYYPTSTGLSQ---IMPGAPRSALLSAAYKF 153 ++ N++NR+Y+ ++ G S ++ G PR+ S + F Sbjct: 695 SIDNVANRNYWQSAGGASNSGYLVAGNPRTFSTSVSVAF 733 >gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 704 Score = 62.8 bits (151), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 7/154 (4%) Query: 4 GLERNRGIELSVNGQLATDWFIRSGFSVQNARIVEAKSCAACGASVQGKRSAGVSSANGS 63 G +R G ELS + L W + +G++ NA I E+ S G +GK + +G+ Sbjct: 554 GKQRTDGAELSFSADLKQGWKLLAGYAWLNAVITESSSFD-NGVPFKGKNATLTPRHSGN 612 Query: 64 VFVGYAPVQGFFAEAGVIYEGSRYVDVANRLDLPAYTRWDAKAGYRFPKVELTLAVTNLS 123 +++ +G G G+R+ + N + LP Y DA A YR K E+ L + NL Sbjct: 613 LWLTRELGEGLVVGGGANAVGARFANPGNTVTLPGYVTVDAMAAYRTSKYEVQLNIGNLF 672 Query: 124 NRSY----YPTSTGLSQIMPGAPRSALLSAAYKF 153 N Y + T+ LS MPGAPR+ L+ Y Sbjct: 673 NTGYIISGHGTNPNLS--MPGAPRNVALTLRYHM 704 >gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 60.1 bits (144), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 11/158 (6%) Query: 1 VLTGLERNRGIELSVNGQLATDWFIRSGFSVQNARIVEAKSCAACGASVQGKRSAGVSSA 60 + G R++G+EL N +L W + + +A + + G R + + Sbjct: 554 IAAGEVRSKGVELDANARLGHHWRVTGNLAYTDAYVSRDNTLPV------GSRLVNIPRS 607 Query: 61 NGSVFVGYAPVQGFFAEAGV----IYEGSRYVDVANRLDLPAYTRWDAKAGYRF-PKVEL 115 + S+ + A GV Y G R D A LP+Y A A ++F PK++L Sbjct: 608 SASLLAVFEDADAHGAPYGVGGGLNYVGRRTGDQAGSFMLPSYVTARALAYWQFTPKMKL 667 Query: 116 TLAVTNLSNRSYYPTSTGLSQIMPGAPRSALLSAAYKF 153 +L V NL N+ YY +S IMPG R+A L+ KF Sbjct: 668 SLDVNNLFNKRYYSSSYNSLWIMPGDERNATLALNIKF 705 >gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 738 Score = 56.2 bits (134), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 6/154 (3%) Query: 2 LTGLERNRGIELSVNGQLATDWFIRSGFSVQNARIVEAKSCAACGASVQGKRSAGVSSAN 61 L G R G G + +W + + ++ A+++E A G + GK Sbjct: 589 LAGKVRVNGARAGATGHITREWQVAANYTYLGAKVLEG----AAGDNSVGKVPVNTPKHT 644 Query: 62 GSVFVGYAPVQGFFAEAGVIYEGSRYVDVANRLDLPAYTRWDAKAGYRFPKVELTLAVTN 121 + + Y + G Y RY D N + + YTR+DA Y ++ L + N Sbjct: 645 LTTWTTYDLAPHWQIGGGASYMSQRYADAPNTVQVGGYTRYDAMLAYTTKAYDIRLNLYN 704 Query: 122 LSNRSYYPT--STGLSQIMPGAPRSALLSAAYKF 153 LSN+ YY + + +PG+ R+ALLS Y+ Sbjct: 705 LSNKMYYDALIQSDGGRSVPGSGRTALLSLTYRM 738 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.132 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 458,986 Number of extensions: 16891 Number of successful extensions: 68 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 65 Number of HSP's successfully gapped: 8 Length of query: 153 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 76 Effective length of database: 1,255,275 Effective search space: 95400900 Effective search space used: 95400900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)