BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0126.p
         (286 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310364|ref|YP_003774456.1| 2-keto-3-deoxygalactonate kinas...   313   9e-87

>gi|300310364|ref|YP_003774456.1| 2-keto-3-deoxygalactonate kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 319

 Score =  313 bits (803), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 179/310 (57%), Positives = 204/310 (65%), Gaps = 33/310 (10%)

Query: 8   LIALDWGTTSLRAYRLGEDGAVLDKRGLPWGIMNLPVVEGDFSRAAGFAKAFDEACGDWL 67
           LIALDWGT+SLR YR    G V+++R  PWGIMNLP VE      A +  A + ACGDW+
Sbjct: 10  LIALDWGTSSLRCYRYDGSGQVVERRAHPWGIMNLPAVEHGDDAQAPYRAALEAACGDWI 69

Query: 68  QSDPATPLIAAGMVGSAQGWREASYVEIPLAVTDIGKQLTHVDLGAGRTLHIVPGLLQRA 127
            + P   LIAAGMVGS QGWREA+Y+ +PLA   IG++LT VD G GR+L I+PGLLQ +
Sbjct: 70  AAAPEAALIAAGMVGSKQGWREAAYLTVPLAPDGIGRKLTEVDTGLGRSLWIIPGLLQNS 129

Query: 128 ALPNVIRGEETQVVGALDTWQGGDEVLIGLPGTHSKWVRVQNRIITHFDTFMTGEVYAAL 187
           ALPNV+RGEETQV+GAL   Q   E+LIGLPGTHSKWVRV    I HFDTFMTGEVY AL
Sbjct: 130 ALPNVMRGEETQVIGALQQ-QRQSELLIGLPGTHSKWVRVVEGRIEHFDTFMTGEVYGAL 188

Query: 188 SQHTILGRTMEHREQGDPAAFEHGLRVASSEDGRAGVLSNIFSSRTLGLVGQLDATGQPD 247
             HTILGRTM   +  D AAF  G RVA    G+AGVLSNIFSSRTLGL G+L    QPD
Sbjct: 189 CGHTILGRTMHKPDVPDDAAFVRGARVAQGPQGQAGVLSNIFSSRTLGLTGELAPEAQPD 248

Query: 248 YLSGLLIGHEIAALKATDIAAQ--------------------------------ATERGL 275
           YLSGLLIGHEIAALK+   A Q                                ATE GL
Sbjct: 249 YLSGLLIGHEIAALKSLYPAQQAPIVLIGDAGLCRRYRLALELYGLGPVSEADAATEAGL 308

Query: 276 WKIARQAGLL 285
           W +AR AGL+
Sbjct: 309 WILARHAGLV 318


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,032,783
Number of extensions: 47928
Number of successful extensions: 139
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,222,130
Effective search space: 246870260
Effective search space used: 246870260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)