BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0125.p
         (205 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310363|ref|YP_003774455.1| 2-dehydro-3-deoxy-6-phosphogala...   290   6e-80
gi|300310434|ref|YP_003774526.1| 2-keto-4-hydroxyglutarate aldol...    69   2e-13

>gi|300310363|ref|YP_003774455.1|
           2-dehydro-3-deoxy-6-phosphogalactonate aldolase
           [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score =  290 bits (742), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 146/202 (72%), Positives = 166/202 (82%)

Query: 2   LKEALKQCGLIAILRGIRPDEVEAVGQALYDAGFRIIEVPLNSPEPFESIRVLRNVLPAN 61
             +AL+  G+IAILRG+R  E EA+G ALY++GFRIIEVPLNSPEP  SI  LR  LPA+
Sbjct: 8   FHDALRSTGMIAILRGVRNAEAEAIGAALYESGFRIIEVPLNSPEPLLSITALRKSLPAD 67

Query: 62  CMVGAGTVLSPAQVLQVKDAEGQLIVMPHSDPEVIRAATAAGLASAPGVATVTEAFAALA 121
           C+VGAGTVL PAQV QVKDA G+LIVMPHSD  VIRAA  AGL SAPGVATVTEAFAAL 
Sbjct: 68  CIVGAGTVLKPAQVEQVKDAGGELIVMPHSDGAVIRAARDAGLYSAPGVATVTEAFAALD 127

Query: 122 AGADILKMFPAEQLGPVVVKAWRAVIPASVMLVPVGGITPDSLKEFTAAGASAFGLGSAL 181
            GAD+LKMFPAEQLGP VVKAWRAVI   + L+PVGGITP+ +  F AAGAS FGLGSAL
Sbjct: 128 NGADVLKMFPAEQLGPQVVKAWRAVIARDIALLPVGGITPEGMAVFHAAGASGFGLGSAL 187

Query: 182 YKPGMTAEQVRKNADAFVSAWK 203
           Y PG++AEQVR+ A+AFV+AWK
Sbjct: 188 YTPGLSAEQVRQRAEAFVAAWK 209


>gi|300310434|ref|YP_003774526.1| 2-keto-4-hydroxyglutarate
           aldolase/-keto-3-deoxy-6-phosphogluconate aldolase
           [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score = 69.3 bits (168), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 72/142 (50%), Gaps = 1/142 (0%)

Query: 28  QALYDAGFRIIEVPLNSPEPFESIRVLRNVLPANCMVGAGTVLSPAQVLQVKDAEGQLIV 87
           +AL   G R++E+ L +     +IR +   +P + +VG GT+ SP +    +DA     V
Sbjct: 30  RALVAGGIRVLEITLRTEHGLPAIRAIAESVP-DAIVGVGTLTSPEEFTASRDAGAVFGV 88

Query: 88  MPHSDPEVIRAATAAGLASAPGVATVTEAFAALAAGADILKMFPAEQLGPVVVKAWRAVI 147
            P   P +I AA  +GL   PGV T +E  AA  AG   LK+FPA   G V +    A  
Sbjct: 89  SPGLTPALIEAAKRSGLPLLPGVMTPSEVMAAREAGFRQLKLFPAVPAGGVGMLNGIAGP 148

Query: 148 PASVMLVPVGGITPDSLKEFTA 169
            A V   P GGIT ++  +F A
Sbjct: 149 LADVSFCPTGGITQETAPQFLA 170


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 533,910
Number of extensions: 17401
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 2
Length of query: 205
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,236,335
Effective search space: 153305540
Effective search space used: 153305540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)