BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0122.p
         (439 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310765|ref|YP_003774857.1| Zn-dependent protease (chaperon...   457   e-130
gi|300313157|ref|YP_003777249.1| long-chain-fatty-acid-CoA ligas...   333   2e-92

>gi|300310765|ref|YP_003774857.1| Zn-dependent protease (chaperone
           function) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 426

 Score =  457 bits (1177), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/267 (87%), Positives = 247/267 (92%)

Query: 172 GTIGLPLLWVILLLMDQAGALWWFYAWLVWSGFQLLMLVLYPTVIAPLFNKFTPLDDDSL 231
             IGLPLLWV+L LM++AGALWWFY W+V   FQLLMLV+YP+ IAPLFNKFT L+DDSL
Sbjct: 157 AVIGLPLLWVVLALMEKAGALWWFYTWIVLCVFQLLMLVIYPSFIAPLFNKFTALEDDSL 216

Query: 232 RARIESLMQRVGFASKGLFVMDGSKRSAHGNAYFSGFGAGKRIVFFDTLLARLAPHEIEA 291
           R+RIE LMQRVGFASKGLFVMDGSKRSAHGNAYFSGFG+GKRIVFFDTLLARLAPHEIEA
Sbjct: 217 RSRIEGLMQRVGFASKGLFVMDGSKRSAHGNAYFSGFGSGKRIVFFDTLLARLAPHEIEA 276

Query: 292 VLAHELGHFKLKHIVKRISVMFAISLAFLALLGYLKGQAWFYTGLGVNPLLFGNNDAMAL 351
           VLAHELGHFKLKHIVKR+ VMFA+SLAFLALLGYLK QAWFYTGLGV PLL G+NDAMAL
Sbjct: 277 VLAHELGHFKLKHIVKRVVVMFAMSLAFLALLGYLKQQAWFYTGLGVEPLLMGSNDAMAL 336

Query: 352 ILFMLALPIFTFLLSPLSSLSSRKHEFEADAFAAQHTNAQDLVSALVKLYEDNASTLTPD 411
           ILFML LPIFTFLLSPLSSLSSRKHEFEADAFAAQHT AQDLVSALVKLYEDNASTLTPD
Sbjct: 337 ILFMLVLPIFTFLLSPLSSLSSRKHEFEADAFAAQHTQAQDLVSALVKLYEDNASTLTPD 396

Query: 412 PLHSAFYDSHPPASLRIGKLHDKLNAA 438
           PLHSAFYDSHPPASLRI +LH  L AA
Sbjct: 397 PLHSAFYDSHPPASLRIRRLHGALAAA 423


>gi|300313157|ref|YP_003777249.1| long-chain-fatty-acid-CoA ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 566

 Score =  333 bits (854), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 156/181 (86%), Positives = 166/181 (91%)

Query: 10  VAKGAVLTHRNLVANVLQAEEWLMPALKQGAKLDQLVFICALPLYHIFALTVCNMLGTRE 69
           VAKGAVLTHRNLVANVLQAEEWL PALK G  +DQLVF+CALPLYHIFALTVCNMLGTRE
Sbjct: 219 VAKGAVLTHRNLVANVLQAEEWLTPALKAGKPIDQLVFVCALPLYHIFALTVCNMLGTRE 278

Query: 70  GALNVLIPNPRDIPGFIKELGKYKVNTFPAVNTLYNALLNHPDFAKLDFSGYRCCVGGGM 129
           GALN+LIPNPRDIPGF+KEL KYKVNTFPAVNTLYNALLN+ DFA+LDFSGYRCCVGGGM
Sbjct: 279 GALNLLIPNPRDIPGFVKELAKYKVNTFPAVNTLYNALLNNADFARLDFSGYRCCVGGGM 338

Query: 130 AVQKSVADKWKKVTGCPIIEGYGLSETSPIASANPCTISDYTGTIGLPLLWVILLLMDQA 189
           AVQKSVADKWKK+TGCPIIEGYGLSETSPIASANPCTI +YTGTIGLPL      ++D  
Sbjct: 339 AVQKSVADKWKKLTGCPIIEGYGLSETSPIASANPCTIDEYTGTIGLPLPSTEFAILDDD 398

Query: 190 G 190
           G
Sbjct: 399 G 399


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,331,827
Number of extensions: 52919
Number of successful extensions: 226
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 2
Length of query: 439
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 351
Effective length of database: 1,203,190
Effective search space: 422319690
Effective search space used: 422319690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)